Query= MSMg01no289_c01.b1 MSMg01no289_c01.b1 CHROMAT_FILE:
MSMg01no289_c01.b1 PHD_FILE: MSMg01no289_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:22 2005
(610 letters)
>mm_chr1_6587553_6588559
Length = 1007
Score = 1035 bits (535), Expect = 0.0
Identities = 581/605 (96%), Gaps = 15/605 (2%)
Strand = Plus / Plus
Query: 4 ggaattcaaggcccattccgaaacataataaaagcaatatgtagtaaaccagtagccaat 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattcaaggcccatactgaaacataataaaagcaatatgtagtaaaccagtagccaat 275
Query: 64 atcaaattaaatgaagagcaacttgaagcaattccactaaaatcagggactaggcaaggc 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atcaaattaaatgaagagaaacttgaagcaattccactaaaatcagggactaggcaaggc 335
Query: 124 tccatactccctccctacctattcaatatagtgcttgaagtcctagccagagcaattaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tccatactccctccctacctattcaatatagtgcttgaagtcctagccagagcaattaga 395
Query: 184 caacagaaggagatcaaagggatagaaattggaaaggaagaaatcaaaatatctctattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caacagaaggagatcaaagggatagaaattggaaaggaagaaatcaaaatatctctattt 455
Query: 244 gtagatgatatgatagtatacttaagttattcaaaaattccaccagagaactcctaaatt 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gcagatgatatgatagtatacttaagttattcaaaaattccaccagagaactcctaaatt 515
Query: 304 tgataaacaacttcagcaaagtgcctggatataaaattaattcaaacaagttagtggcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgataaacaacttcagcaaagtgcctggatataaaattaattcaaacaagttagtggcct 575
Query: 364 tcctctacacaaaggataaacaggcttaccttcacaaaaaaaccaagaaagaagaacagc 423
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 576 tcctctacacaaaggataaacaggcttaccttcatgaaaaaaccaagaaagaagaacagc 635
Query: 424 caagacatggccaccagcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaga 483
|||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 636 caagacatggccaccagcct------------gtgtgtgtgtgtgtgtgtgtgtataaga 683
Query: 484 gtgagaaagcagaggagggattgattaattggggaaataaagaagaccatcaagaggaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgagaaagcagaggagggattgattaattggggaaataaagaagaccatcaagaggaag 743
Query: 544 gaggaaggataggaagaatagtgggagaagaacagtacagtacaatgttatatggaagta 603
||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 744 gaggaaggataggaagaatagtgggagaa---cagtaaagtacaatgctatatggaagta 800
Query: 604 taaag 608
|||||
Sbjct: 801 taaag 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1007
Length adjustment: 10
Effective length of query: 600
Effective length of database: 997
Effective search space: 598200
Effective search space used: 598200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_c01.g1 MSMg01no289_c01.g1 CHROMAT_FILE:
MSMg01no289_c01.g1 PHD_FILE: MSMg01no289_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:23 2005
(315 letters)
>mm_chr1_6756376_6757090
Length = 715
Score = 576 bits (298), Expect = e-169
Identities = 307/310 (99%)
Strand = Plus / Minus
Query: 1 gaacttgggccaattcataggcatgcaatgaaaccaggctataatttataggctatcagt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 484 gaacttgggccaattcataggcatgcaatgaaacaaggctataatttataggctatcagt 425
Query: 61 ctcactggccttttcttctctactctgttaatcaaacagtggaaagttcagtgtctgtca 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 424 ctcactggccttttcttctctactctgttaatcaaacagtggaaagctcagtgtctgtca 365
Query: 121 catgggggacaataaatcagaaacctaaaatacataagctctttttttgttttttttcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catgggggacaataaatcagaaacctaaaatacataagctctttttttgttttttttcgt 305
Query: 181 gggaaattttaaacctgtgaaatgtctgtctcttttctcccattctaattcaaaatcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggaaattttaaacctgtgaaatgtctgtctcttttctcccattctaattcaaaatcaga 245
Query: 241 tcttattggaccatggcacaactcagtaatagaaagcactgtaaacacacacacacacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcttattggaccatggcacaactcagtaatagaaagcactgtaaacacacacacacacac 185
Query: 301 atacacacac 310
| ||||||||
Sbjct: 184 acacacacac 175
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
