Query= MSMg01no289_g04.b1 MSMg01no289_g04.b1 CHROMAT_FILE:
MSMg01no289_g04.b1 PHD_FILE: MSMg01no289_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:41 2005
(706 letters)
>mm_chr1_141389582_141390681
Length = 1100
Score = 1236 bits (639), Expect = 0.0
Identities = 685/705 (97%), Gaps = 12/705 (1%)
Strand = Plus / Minus
Query: 5 gaattcattaaacagttttagtaactttaatatctacatttttatttttacacaaagtca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaattcattaaacagttttagtaactttaatatctacatttttatttttacacaaagtca 841
Query: 65 tatctaaacagtttacactgacagtaaaaactgctccaggtatccatgattggcataatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tatctaaacagtttacactgacagtaaaaactgctccaggtatccatgattggcataatt 781
Query: 125 cctttttgtcccacactgaaaatgtttccatttactaataagaaattccaagtgtatcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 cctttttgtcccacactgaaaatgtttccatttactaataagaaattccaagtgtatcca 721
Query: 185 ttaccagttgaatagcttgcagggagtttgtaatttcttccacattatcacgcctcaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttaccagttgaatagcttgcagggagtttgtaatttcttccacattatcacgcctcaaaa 661
Query: 245 cccactgtggcttaagtctgttaaaaaaaaaaagaagaagcattcatgaagtgttttaaa 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 660 cccactgtggcttaagtctgttaaaaaaaaaaa-aagaagcattcatgaagtgttttaaa 602
Query: 305 gtgtgagaaagcttcatatcattgctcactactaccaatataacctatacattattttta 364
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtgtgagaaagcttcacaccattgctcactactaccaatataacctatacattattttta 542
Query: 365 aaattgat-c--gccccctctttgcaacttatgttacttgtcttcaccgtcgccttctct 421
|||||||| | | |||||||||| | ||||||||||||||||||||||||||||
Sbjct: 541 aaattgatgctgg---cctctttgcagcgtatgttacttgtcttcaccgtcgccttc--- 488
Query: 422 gttcatttatttaccaggcactcaaggttggatccttggtgagactggttaagccttttc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 --tcatttatttaccaggcactcaaggttggatccttggtgagactggttaagccttttc 430
Query: 482 tcagatcttgtcgtcaccatccttagttcttagtaacatcatcatcaatttgaccacagt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcagatcttgtcgtcaccatccttagttcttagtaacatcatcatcaatttgaccacagt 370
Query: 542 ccttacatccttgctttctgtactaccttaaccattcaactgtcctttcttacaagcaca 601
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 369 ccttacatccttgctttctgtactaccttaaccagtcaactgtcctttcttacaagcaca 310
Query: 602 gactagattttgtcttcaccagaaactgcgtgggcattggctctcagtgtaaacgttaaa 661
||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct: 309 gactagattttgtcttcaccagaaattgcgtggccattggctcttagtgtaaacgttaaa 250
Query: 662 cttccattctgcaaactccactctgatcccatcatgtcacatgcc 706
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cttccattctgcaaactccactctgatcccatcatgtcacatgcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1100
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1090
Effective search space: 758640
Effective search space used: 758640
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no289_g04.g1 MSMg01no289_g04.g1 CHROMAT_FILE:
MSMg01no289_g04.g1 PHD_FILE: MSMg01no289_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:41 2005
(194 letters)
>mm_chr1_141218638_141219230
Length = 593
Score = 342 bits (177), Expect = 6e-99
Identities = 189/193 (97%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 1 taaacatttcttaaccagaagctattactaactggattggttcatctcatgactgctttc 60
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 taaacatttcttaaccagaggctattactaactggattggctcatctcatgactgctttc 260
Query: 61 caatacagggttaactcttttttttttttttacaagaataaaaaaatcagtagaaacagt 120
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatacagggttaactc-ttttcttttttttacaagaataaaaaaatcagtagaaacagt 319
Query: 121 gttagatacacagttagtctattttatacaatatggagtattcataagctttcaatattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttagatacacagttagtctattttatacaatatggagtattcataagctttcaatattt 379
Query: 181 cttagtggattaa 193
|||||||||||||
Sbjct: 380 cttagtggattaa 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 593
Length adjustment: 8
Effective length of query: 186
Effective length of database: 585
Effective search space: 108810
Effective search space used: 108810
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
