BAC Information

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BAC

Clone NameMSMg01-289I24
Chromosome1 (Build37)
Map Location 191,587,852 - 191,588,137
singlet/doubletsinglet
Overlap genePtpn14
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf
Downstream geneLOC100042438, Smyd2, Prox1, LOC100039394, EG666975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289I24.T7 (MSMg01no289_i24.b1)MSMg01-289I24.TJ (MSMg01no289_i24.g1)
ACCAG419081AG419082
length769547
length of high quality
(start - end)
298 (45 - 342)39 (72 - 110)
definitionCHROMAT_FILE: MSMg01no289_i24.b1 PHD_FILE: MSMg01no289_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:54 2005CHROMAT_FILE: MSMg01no289_i24.g1 PHD_FILE: MSMg01no289_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCACAGCTCCAAGCCCAGCATCTCACCCTGGAGGCAGGTCCTT
CTCTTGATGGAGCTCAACCCCTATTATGCCTTGTTCAACACAGCTTCCCC
AGGGCTAAGCAGGCGCCTCTAGGCTCATGTCTCCTGGAAGGGTCTGAGCA
CAGGGGCATAGGTGTGCTACTCCCCACATCTAGAGAGGGGGCCAAGATGG
AACCCTGGACCTTCTCTCCTAAGAATCTTGATCCTAGTTCCTGCCTCCAG
ATGCAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGANNNNTTTNTN
NNNNNNTTNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCNNNTNNNNNNTN
NNNNNNNNNNNGGGGGGGCCCCCCCTCTTAAAAAAAAAAAAAAAAAAGTG
GTGGGGGGGGGGTGTCCTCCTTCTTCTCCTTCCCCTCCACATTTTTTACA
CTTGTTTTTTTATTCACGCCCCCTTTACTTTTTTCATTAATACTACCTCT
TATACACTCCTTTCTATATTAAAATATCCACTTATTTTTTGCCCTCCCAC
ACCTTGCTAACTTATTCTTATCATCCCTGTGACCTAAGTTAACCCTTATA
AATCATTTTCCCCTTGTACCCGCTATATCCTTATTTCCTTTCCATATCCC
CCCTTCCTTTTCCCCGCTAACCTCTATTTTTATCCTAGTTTTCTTCCTTT
GTTTCCGTCGGTCTATTTG
NNCCTCGATGAAGTGGAGGCTGGCGGCGCTGGTTCGAAATTAGGTGAACT
ATAGAAGATTCAGAAAATATCCCTAACCGGTCCATCTTGCTTCTCCCATT
GCCTGACATGAAATATTTTTTCCATGGATGCAGTTACCTAAAAGGAACTT
CAGAGGCAGGAACTCCAAGGGTGGTTTTGGATTCCAGGTTATTTTAGAAA
AATTTTGGGGAAAAAAATTTGGGGGGAAAAAATAACACATTTTTAAAAAG
GTGTTTTAAAAAATTTATTTTTGGGGAGTTTTTCTTAAAAAATGGGGGAA
AAAATTGGGGGGGAAAAAAAAGGGGCCCTTCATATAAAAAAAAAAAGAAG
AAAGATTTTTTTTTCTCTTTCCACTTTGTATGTGGTGGGGGGTGAAAGAA
TAAAAAAAAAACAAGAAGGGGTGTGGTGGGTATTTTTTTTTTTTAAATAA
AAACAAAAAACGTTTTTTTTTTTTTTTTTTTTAAGAAAAAGAAAAAAAAA
AACCCTCTCCCCCCTCTTTTTTATTATATTAGTAAAAATGGTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_i24.b1 MSMg01no289_i24.b1 CHROMAT_FILE:
MSMg01no289_i24.b1 PHD_FILE: MSMg01no289_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:54 2005
         (298 letters)



>mm_chr1_191587649_191588349
          Length = 701

 Score =  499 bits (258), Expect = e-146
 Identities = 278/286 (97%), Gaps = 3/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctccacagctccaagcccagcatctcaccctggaggcaggtccttctcttga 63
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatgctctccacagctccaggcccagcatctcaccctggaggcaggtccttctcttga 263

                                                                       
Query: 64  tggagctcaacccctattatgccttgttcaacacagcttccccagggctaagcaggcgcc 123
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 264 tggagctcaacccctattatgccttgttcatcacagcttccccagggctgagcaggcgcc 323

                                                                       
Query: 124 tctaggctcatg---tctcctggaagggtctgagcacaggggcataggtgtgctactccc 180
           ||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctagactcatgatgtctcctggaagggtctgagcacaggggcataggtgtgctactccc 383

                                                                       
Query: 181 cacatctagagagggggccaagatggaaccctggaccttctctcctaagaatcttgatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacatctagagagggggccaagatggaaccctggaccttctctcctaagaatcttgatcc 443

                                                         
Query: 241 tagttcctgcctccagatgcaggagagggagagggagagggagagg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagttcctgcctccagatgcaggagagggagagggagagggagagg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 701
Length adjustment: 9
Effective length of query: 289
Effective length of database: 692
Effective search space:   199988
Effective search space used:   199988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)