BAC Information

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BAC

Clone NameMSMg01-289J16
Chromosome1 (Build37)
Map Location 31,898,736 - 31,899,026
singlet/doubletsinglet
Overlap genenone
Upstream genePhf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneLOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289J16.T7 (MSMg01no289_j16.b1)MSMg01-289J16.TJ (MSMg01no289_j16.g1)
ACCAG419111AG419112
length719719
length of high quality
(start - end)
54 (256 - 309)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no289_j16.b1 PHD_FILE: MSMg01no289_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:57 2005CHROMAT_FILE: MSMg01no289_j16.g1 PHD_FILE: MSMg01no289_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAGXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCGCACCCGCNCGGAAN
NCNNNGNNCTTACANGACGCGAGGGNGNAANGGGGGNANNNGANNNNCGG
GAAGANANCTTCTTTAGCCCCANAGAGAGGGGGGANAGNAGNCNCCGANC
GGAAGNAGGAGAGGGAAAGAANCGNNCNNAANCGGNGGGGGGNCNNNNNN
GNCNNANNGANGGNGNCNNNNGCCNNGCAGAAACNNGGGAGNNNCAATAT
TTTTCATTTGTCAATTCTCTATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAANNGTTCTTTTTGGTCTTTTATCAACAAGGCGNGACCCCACNNN
CCCCNCTTTTTTTTTTTTCCCCCCCCCCCCCCGAGAAGNGCCNTGANCCA
CNNAGAANNGACCCCCCCCCAAAAANGAAAAGNAAGGAGCGGGGGGGGGG
GCGGCGACACGANAACAACCAGCCGCGCCAGCACCAAGCGAAGAAAAAGC
AGCCACACAACCACAGGAAGGCAAAAGCGCCCAAGACGAAGAACAAGGGA
CCAACGGGCGCGAGGGAACACAGCCGGGGCGACAAGGCAAGACCAAAGGG
CCACAAGACGGACACAAAACCAAGACCAAGGAGGGGAAAAACACAAGAGC
ACCGTTTTTTTTTTTTTAGGACAGGCCTGGCGAATCCACCCAAAGGGACT
TTTATCCTTGGAAAAAGGT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAGTGAGATGCTAACACGGGC
AGGTAGAAATCCAACTGTCCTGATTTCTTCCTGTGTGAAGGTCACACATA
GATGATTTAAAGAAGACTCATTGTCCCTTGGTGAGATTTGCAAAGCAGAA
GGAGCTGGAGGATTATCTGACTCAGGCCCTTTATTTCACATACAAAGACA
TTGAATTTGAAATACACTGTGAGATGGGCAGAAGGCACTGGGATTTAAGT
TAATGCTACAGAAAAGAATATCAGTCATAACACTTACTAATCAAATATAC
CTCGATAAACTATTATTTTCTTAACTCCCTCCCACACTTGTAAAGAGAGG
GATATCTACATTGTAGACGCCCCCCAAAATATACCATATGCATTTTAAAG
AATAAAATATTCTTCCTACCTATCTATTGAACAATAGCTGTTATGAGAGG
GCAGCATGGAACAAACCCAGATCACTACTACATTGCAATGAATCATTCTA
TATTGTAATAGTGTCTGCCATCTAAGATTAAAATATCCATTTGCTCTTTG
CTTTCTTATTTCTTCTAATTTTCTTCCTTTCGGGTCAATGCTTCAACTAC
ATTTTAGCTAGGGAAGAAACTGATATCTAATTATTAAACTAGCAACAAAA
AAAAAAACAACCCTTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_j16.g1 MSMg01no289_j16.g1 CHROMAT_FILE:
MSMg01no289_j16.g1 PHD_FILE: MSMg01no289_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:57 2005
         (290 letters)



>mm_chr1_31898536_31899226
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaagtgagatgctaacacgggcaggtagaaatccaactgtcctgatttcttcctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caggaagtgagatgctaacacgggcaggtagaaatccaactgtcctgatttcttcctgtg 432

                                                                       
Query: 61  tgaaggtcacacatagatgatttaaagaagactcattgtcccttggtgagatttgcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgaaggtcacacatagatgatttaaagaagactcattgtcccttggtgagatttgcaaag 372

                                                                       
Query: 121 cagaaggagctggaggattatctgactcaggccctttatttcacatacaaagacattgaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 371 cagaaggagctggaggattatctgactcaggccccttatttcacatacaaagaaattgaa 312

                                                                       
Query: 181 tttgaaatacactgtgagatgggcagaaggcactgggattt-aagttaatgctacagaaa 239
           || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 311 ttggaaatacactgtgagatgggcagaaggcactgggatttgaagttaacgctacagaaa 252

                                                              
Query: 240 agaatatcagtcataacacttactaatcaaatatacctcgataaactatta 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agaatatcagtcataacacttactaatcaaatatacctcgataaactatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)