Query= MSMg01no289_m24.b1 MSMg01no289_m24.b1 CHROMAT_FILE:
MSMg01no289_m24.b1 PHD_FILE: MSMg01no289_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:12 2005
(320 letters)
>mm_chr1_40548602_40549323
Length = 722
Score = 460 bits (238), Expect = e-134
Identities = 301/334 (90%), Gaps = 22/334 (6%)
Strand = Plus / Plus
Query: 7 attcttacttcatgctgcctttaaaaaaa--ttcttggtttagttaccctactttactat 64
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 207 attcttacttcatgctgcctttaaaaaaaaattcttggtttagttaccctactttactat 266
Query: 65 tttccgtttttgctccatcatttcttatgtatctgttcatgctattgaagaaatccctca 124
|||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 tttcagtttttgctttatcatttcttatgtatctgttcatgctattgaaggaatccctca 326
Query: 125 tctttcagggtgctcagaccctgcttgcatgtctgtctgtctgtctgtct------ctct 178
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 tctttcagggtgctcagaccctgcttgcatgtctgtctgtctgtctgtctgtctgtctct 386
Query: 179 ccatgcatgcatgcatgaa------tgtgttggtcagttgttctgcctgtctgtctgtca 232
|||||| |||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 387 ccatgcgtgcatgcaggcaggtgtgtgtgttggtcagttgttctgcctgtctgtctgtca 446
Query: 233 gtctgtctgtctgtctacctg--------cctgcctaattggtcgtctgcctgtctttga 284
|||||||||||||||| |||| ||||||| |||||| ||||||||||||||||
Sbjct: 447 gtctgtctgtctgtctgcctgtctgcctgcctgcctgattggttgtctgcctgtctttga 506
Query: 285 gatagagtcttatgttgcccaggctggcctcccc 318
|||||||||| |||||||||||||||||||||||
Sbjct: 507 gatagagtctcatgttgcccaggctggcctcccc 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space: 221743
Effective search space used: 221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_m24.g1 MSMg01no289_m24.g1 CHROMAT_FILE:
MSMg01no289_m24.g1 PHD_FILE: MSMg01no289_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:12 2005
(672 letters)
>mm_chr1_40726580_40727655
Length = 1076
Score = 973 bits (503), Expect = 0.0
Identities = 562/585 (96%), Gaps = 7/585 (1%)
Strand = Plus / Minus
Query: 1 tgtgcagtccttgaagttaaaagtcagcagaaagggcttccaacaacactttgttatga- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgtgcagtccttgaagttaaaagtcagcagaaagggcttccaacaacactttgttatgaa 526
Query: 60 ---accaccagagatatcaaagggccgccagtgagaagtcacaccatcagggacgctgtt 116
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 525 cataccaccagagatatcaaagggccgccagtgagaagtcacaccatcagggacactgtt 466
Query: 117 ttcccagatgctttgtttagtagtaacatctcatcatgggtgctgaccaggtgacccagg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttcccagatgctttgtttagtagtaacatctcatcatgggtgctgaccaggtgacccagg 406
Query: 177 cttgagaaggagccaaacgaaccacggaaatagaaagggctcaaaagccttcttgggcac 236
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 405 cttgagaaggagccaaacaaaccacggaaatagaaagggctcagaagccttcttgggcac 346
Query: 237 tcacaggggactgtgccagtctccacgctactaagagtagaactgaagagggaaaggcaa 296
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 345 tcagaggggactgtgccagtctccacactactaagagtagaactgaagagggaaaggcaa 286
Query: 297 ccacatatctcttctgatgagcagagtcttcagccccaccccttgcctacatcgattctg 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 285 ccacatatctcttctgatgagcagagtcttcagccccaccccttgcctaaatcgattctg 226
Query: 357 gacacatgaatgtaaaaggactgcataggcataa---tttttttgcagcctacttttaat 413
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 225 gacacatgaatgtaaaaggactgcataggcataaggttttttttgcagcctacttttgat 166
Query: 414 aaggattcagcctgtcctctagcccaccacccagcagaggtagcggaagaaatgttatta 473
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 165 aaggattcagcctgtcctctagcccaccacccagcagaggtagcggaagagatgttatga 106
Query: 474 ggatatgagggaagtgggcctgttcagcaatagttctttggtggtgagccaaatcttctt 533
||||||| ||| ||||| |||| ||||||||||| ||||||||||||||| |||||||||
Sbjct: 105 ggatatggggggagtggacctgctcagcaatagtgctttggtggtgagcccaatcttctt 46
Query: 534 tagtagaaattcagtcctgtagcaaacaccaaatgcaactcagca 578
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 45 tagtagaaattcagtcccgtagcaaacaccaaatgcaactcagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1076
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1066
Effective search space: 705692
Effective search space used: 705692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
