CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGCAGTCTTATAAAGTCATAAATGAAATGAACCATACAGATATT
TGTAGAACATTTCCCCCATTACACCCAATATACTTTCTTCTCAGCAGCTC
ATAGAACATTCTCCAAGATTGATTATATACTTGGACACAAAGCAAATCTC
AACAGATATAAGAAAGCTGAAAAAGCAGCCTGCATACTATTAGACCCCAA
TGGATTACAGCTGCATATCAGCAACAAAAGCAAAAGACAGTATATAAACT
CATAAATTTTTTCAGTATAGAAACTGGAAAAATCACTACTAAATAAAAAA
TGGGTCAATACTGAAAGACAGAAAGGAAGAAAGGAAGAAAAAATGGAAAG
AAAGAGAGGAAGGAAGGAACCCAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGGAGGGAGGGAGGTTTTNTTTTTTTTTTNTTT
TTTTTTTTTTTTNNTTTNTTTTTTTTTTTTNTTTTTTNTTTTTNNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTNNTTTTTTTTNTNNTTTTNTTTTTTNNTNTT
TTTTTTTNTTTTTTTTTTNTTTTNNTNNNTTTTTTTTTTTTNTTTTTTNT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGCAGGACCTTTCCTGAGAAGACTGGTC
TCAGGTCAGATTCAGTCGACCCTGGTCACTGGTCCACCTAACATTGCATA
TCTCCACCTATTAGTACTACAGGGAGCAAAGATTTTTTTCTTTATGTATA
TCCTCACTAGCCTTCCTATAAGTGAGGTATTTATTAAAGCTAATAAATAA
ATAATAGCCATTATCTTTTTTTTAAAAATCATATTCTGGAAGAATCAAAT
TCTATGTATAAGGTTGTATCATTAAACTAAATTCAAAATCCAAAGTATGT
TTCATAGAAACAAATACAAATCTAATGTTGACTAGTATTCTTTAAAGTAG
CCACTATTTGCTGCCCCACCACCGGGCAGAACTCTGCTTAGCCTCTCTGG
GACTGCCTTACTCACTGTAAGGTCCTAGTTGTTACTGAGAGAACTTCTGA
TCACTTACTTGCTGTCCTCTGTGCATGTCAAATGGTAAAACTTGTGACTC
CTGACAAAAGAGGCTACAGCATGAACTAAAGGGAATAAAGGAATCCTTCC
CTAAGGAAATCCCATTTAGAACCAAAAAACAAAGTATGAGTATACATGCA
TATGTATGTGTGCAAGTATGCAAAGACATTATGTGTCTGCATGTAGACAT
GGGTGGAAAGAGAACATTTATCTGTGTAG

Query= MSMg01no289_n17.g1 MSMg01no289_n17.g1 CHROMAT_FILE:
MSMg01no289_n17.g1 PHD_FILE: MSMg01no289_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:15 2005
         (656 letters)



>mm_chr1_23282616_23283671
          Length = 1056

 Score =  975 bits (504), Expect = 0.0
 Identities = 532/546 (97%), Gaps = 9/546 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcaggacctttcctgagaagactggtctcaggtcagattcagtcgaccctggtcactg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||
Sbjct: 542 ttgcaggacctttcctgagaagactggtctcaggtcagattcaggcgatgctggtcactg 483

                                                                       
Query: 61  gtccacctaacattgcatatctccacctattagtactacagggagcaaagatttttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtccacctaacattgcatatctccacctattagtactacagggagcaaagatttttttct 423

                                                                       
Query: 121 ttatgtatatcctcactagccttcctataagtgaggtatttattaaagctaataaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttatgtatatcctcactagccttcctataagtgaggtatttattaaagctaataaataaa 363

                                                                       
Query: 181 taatagccattatcttttttttaaaaatcatattctggaagaatcaaattctatgtataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taatagccattatcttttttttaaaaatcatattctggaagaatcaaattctatgtataa 303

                                                                       
Query: 241 ggttgtatcattaaactaaattcaaaatccaaagtatgtttcatagaaacaaatacaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggttgtatcattaaactaaattcaaaatccaaagtatgtttcatagaaacaaatacaaat 243

                                                                       
Query: 301 ctaatgttgactagtattctttaaagtagccactatttgct-----gccccaccaccggg 355
           |||||||||||||||||||||||||||||||||||||||||     |    |  ||||||
Sbjct: 242 ctaatgttgactagtattctttaaagtagccactatttgctgtaagg----attaccggg 187

                                                                       
Query: 356 cagaactctgcttagcctctctgggactgccttactcactgtaaggtcctagttgttact 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cagaactctgcttagcctctctgggactgccttactcactgtaaggtcctagttgttact 127

                                                                       
Query: 416 gagagaacttctgatcacttacttgctgtcctctgtgcatgtcaaatggtaaaacttgtg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gagagaacttctgatcacttacttgctgtcctctgtgcatgtcaaatggtaaaacttgtg 67

                                                                       
Query: 476 actcctgacaaaagaggctacagcatgaactaaagggaataaaggaatccttccctaagg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  actcctgacaaaagaggctacagcatgaactaaagggaataaaggaatccttccctaagg 7

                 
Query: 536 aaatcc 541
           ||||||
Sbjct: 6   aaatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)