BAC Information

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BAC

Clone NameMSMg01-289O01
Chromosome1 (Build37)
Map Location 161,628,947 - 161,785,105
singlet/doubletdoublet
Overlap geneTnr
Upstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289O01.T7 (MSMg01no289_o01.b1)MSMg01-289O01.TJ (MSMg01no289_o01.g1)
ACCAG419309AG419310
length735740
length of high quality
(start - end)
187 (130 - 316)310 (383 - 692)
definitionCHROMAT_FILE: MSMg01no289_o01.b1 PHD_FILE: MSMg01no289_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:17 2005CHROMAT_FILE: MSMg01no289_o01.g1 PHD_FILE: MSMg01no289_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,628,947 - 161,629,129)(161,784,796 - 161,785,105)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCGGAACCGCCCGCGGAA
NNCAGNACTTGACTGAAGGGAGAGGAAGNCANGANNGAGAAGNCGGNCNC
AACGGGGAANAAATTTTTTCTGAAAAGTCCAATTGGTTTCTTTCCCTAGA
TAAATCCTCAACAGTTTGCAGCCCAGGTTTTATCGACTTTCAGGTCTAAA
TGCAGCATTTCCATGGCTTCTACAGCTTACTCCTCTAAACAACAAGTTCT
ATTTTAAGTTTAAGCTAAGGAGTATGAAATTCAGTGAGCCTTTTGAATAC
TACAAGACCGTATTTTTTTTTTAGTGAGCCAAAAGCNCANGGAGGCCGCA
AANCCCCTTACATCCACCACCCAAACCNNCNNCNAANGGCGAGGNCNNNC
GCNNCNGNGCGCCCGAGAGGAGGACAGAAGACGGGAGGAGGGGCCCGGCA
CGGACGACAGCGGAGCGGCANCCCAACAGCCAGCCAGGCGAGAACNCCNC
AGCCCNCANAAGCAAACAAGACCCCANNGGCCCGAGGAGGCGCAGAGGGA
AAGAGACAGNACCCCGAAAAAACCCAGAGAACANGACAACGAANCNACAC
AANCCAAAGCCCAGCACAGAAGACGGAAGGAGAAGCACACAAGCCAAGGA
CAGACAGAAAAGAGCGGCCNCAGCNAAAAAGACAGCGCCAGGAGGAAGAA
GCCCCGAACAGCAGAGGCCCGCGGGGAAAAAAGCN
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGGAACCTTGTCCATCCACTCTTAG
GTAGCATTAAACAGCTTACTCCCCAGTTCCTGAGCTGACCACTGTCATGG
GGTGAACGTTCACAAGGGACTCTAGGTGTTTCTCATTAAAACAAAACCAA
ACAAAAACCATTTGCTGGTCTCAGCATTTATGTCAAAAGACTACTCATTG
TATATTTGATGACAGCGATTTTATTTTGCAACTGTGGTTTAGCATCTCAA
AAGAGGTTTAGAGAATTCAAAAAGTTAGTGGGTGACCAGGGTAATCATTC
TTACTCTGCTCTTATATGAACTGCCGCCCTTGGGAAAAACCTGTGTCTGA
CTGCTGCTTTTCAAATCTGCAAAACAAGAAGTTCAACGTAGCTTCCCCTC
CACTCCCCGAAGCTTATTTTAAGTACTAGGACTCAAGAGGTTTTGTTGTA
TTATCTTTGCATGGGCAGAAGACAAGGAAGAAAGACTCATTGGTATACTA
TAAGCAGAGACCAAGGCTAGAAGTCAACTGTAATGGCCTTGCTGTCAACT
AGTCAATTGTACTGATGCTGCCATAGAGGGGGCCTCATAATGAAATCCAC
AAGGTGTGCAGCTACTCTCCATATCCTGCCAAAGAAAAATAGTGGCCTAC
AAGGAAGTCTACTTTGTGGCTCTTGATGTTTTCACCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_o01.b1 MSMg01no289_o01.b1 CHROMAT_FILE:
MSMg01no289_o01.b1 PHD_FILE: MSMg01no289_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:17 2005
         (187 letters)



>mm_chr1_161628747_161629333
          Length = 587

 Score =  323 bits (167), Expect = 4e-93
 Identities = 179/183 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattggtttctttccctagataaatcctcaacagtttgcagcccaggttttatcgactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattggtttctttccctagataaatcctcaacagtttgcagcccaggttttatcgactt 260

                                                                       
Query: 61  tcaggtctaaatgcagcatttccatggcttctacagcttactcctctaaacaacaagttc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tcaggtctaaatgcaacatttccatggcttctacagcttactcctctaaacaacaggttc 320

                                                                       
Query: 121 tattttaagtttaagctaaggagtatgaaattcagtgagccttttgaatactacaagacc 180
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 taatttaagtttaagctaaggagtatgaaatttagtgagccttttgaatactacaagacc 380

              
Query: 181 gta 183
           |||
Sbjct: 381 gta 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no289_o01.g1 MSMg01no289_o01.g1 CHROMAT_FILE:
MSMg01no289_o01.g1 PHD_FILE: MSMg01no289_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:17 2005
         (310 letters)



>mm_chr1_161784596_161785305
          Length = 710

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaaaacctgtgtctgactgctgcttttcaaatctgcaaaacaagaagttcaacgtagc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 510 ggaaaaacctgtgtctgactgctgcttttcaaatctgtaaaacaagaggttcaacgtagc 451

                                                                       
Query: 61  ttcccctccactccccgaagcttattttaagtactaggactcaagaggttttgttgtatt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttcctctccactccccgaagcttattttaagtactaggactcaagaggttttgttgtatt 391

                                                                       
Query: 121 atctttgcatgggcagaagacaaggaagaaagactcattggtatactataagcagagacc 180
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 390 atctttgcatgggcagaggacaaggaagaaagactcattggtataccataagcagagacc 331

                                                                       
Query: 181 aaggctagaagtcaactgtaatggccttgctgtcaactagtcaattgtactgatgctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaggctagaagtcaactgtaatggccttgctgtcaactagtcaattgtactgatgctgcc 271

                                                                       
Query: 241 atagagggggcctcataatgaaatccacaaggtgtgcagctactctccatatcctgccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 270 atagagggggcctcataatgaaatccacaaggtgtgcagctactctccatatcctgctaa 211

                     
Query: 301 agaaaaatag 310
           ||||||||||
Sbjct: 210 agaaaaatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)