Query= MSMg01no289_o04.b1 MSMg01no289_o04.b1 CHROMAT_FILE:
MSMg01no289_o04.b1 PHD_FILE: MSMg01no289_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:17 2005
(328 letters)
>mm_chr1_127756364_127757091
Length = 728
Score = 613 bits (317), Expect = e-180
Identities = 323/325 (99%)
Strand = Plus / Minus
Query: 4 ggaattcataagcctttgggaaattgtgctgctcactctagttggagaacaatagtttaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ggaattcataagcctttgggaaattgtgctgctcactctagttggagaacaatagtttaa 469
Query: 64 gacacacacagattaaaatagggcatcagtgggctctgaatgggctctaacaccctctct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gacacacacagattaaaatagggcatcagtgggctctgaatgggctctaacaccctctct 409
Query: 124 tgcttgcttttgtggtacttcattcagcacacatttgcagtgagagctgacagtaactaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgcttgcttttgtggtacttcattcagcacacatttgcagtgagagctgacagtaactaa 349
Query: 184 aaacagtcttcctcccattcatctccttgacaaccatgtgcccatctctgatcttgtctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaacagtcttcctcccattcatctccttgacaaccatgtgcccatctctgatcttgtctt 289
Query: 244 ttatcatcctcccactccccattctccccctgcttccatttgccaatgttctccctttcc 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttatcatccttccactccccattctccccctgcttccatttgccaatgttctccctttcc 229
Query: 304 catctccatgtctcctctttctttc 328
||||| |||||||||||||||||||
Sbjct: 228 catctacatgtctcctctttctttc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_o04.g1 MSMg01no289_o04.g1 CHROMAT_FILE:
MSMg01no289_o04.g1 PHD_FILE: MSMg01no289_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:17 2005
(668 letters)
>mm_chr1_127599822_127600889
Length = 1068
Score = 1154 bits (597), Expect = 0.0
Identities = 651/669 (97%), Gaps = 2/669 (0%)
Strand = Plus / Plus
Query: 1 aattcccttgtgttggtggcaggtcaccacccttaaccttctccacaggacaccccggtc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aattcccttgtgttggtggcaggtcaccacccttaaccttctccacaggacaggacggtc 260
Query: 61 tttgtaagtccctggtgccagaatctaggtcctgttttgtacttaaacatcagccccttc 120
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtaagtccctgttgttagaatctaggtcctgttttgtacttaaacatcagccccttc 320
Query: 121 actgcccagattctgacagacacaccttggtgtgggaaggagatgaactaccttttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgcccagattctgacagacacaccttggtgtgggaaggagatgaactaccttttctat 380
Query: 181 caagggttaaaagaaacaaagaaagatacaaactccatctagcactaaccctctctccac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 caagggttaaaagaaacaaagaaagatacaaactccatctagcactaaccctgtctccac 440
Query: 241 tcagcagttttctattataaaaccatgaactcaaggctgcatcctgctctcaaagtcttt 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagcagttttctaagataaaaccatgaactcaaggctgcatcctgctctcaaagtcttt 500
Query: 301 ctttgtttactgttctgggttagccaagtacatcagtgcaaatgtgacccacgctcagga 360
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 501 ctttgtttactgttctgggttagccaagtacatcagtgcaaatgtgagctaggctcagga 560
Query: 361 ccctagaaaga-tttttttttaaaattggttttgtcatggaatatctttctctatctatg 419
||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctagaaaaaatttttttttaaa-ttggttttgtcatggaatatctttctctatctatg 619
Query: 420 gtgatttcgagtttttctgggtatagtagtctgggttgatatctgtggtctcttagagtt 479
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 620 gtgatttcaagtttttctgggtatagtagtctgggttgatgtctgtggtctcttagagtt 679
Query: 480 tgcaagacatcggcaagatctggttttttagagtctctgttgagaagtcaggtgtaattc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgcaagacatcggcaagatctggttttttagagtctctgttgagaagtcaggtgtaattc 739
Query: 540 tgataggcctgcttttatatgtcactcggccttttacctttgtagattttaatattcttt 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgataggtctgcttttatatgtcactcggccttttacctttgtagattttaatattcttt 799
Query: 600 ctttgttctatacatttagtgttttgaatattatgtgactggaggattttcttttctggt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctttgttctatacatttagtgttttgaatattatgtgactggaggattttcttttctggt 859
Query: 660 ctgatctat 668
|||||||||
Sbjct: 860 ctgatctat 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
