Query= MSMg01no290_a01.b1 MSMg01no290_a01.b1 CHROMAT_FILE:
MSMg01no290_a01.b1 PHD_FILE: MSMg01no290_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:26 2005
(664 letters)
>mm_chr1_141379202_141380267
Length = 1066
Score = 1230 bits (636), Expect = 0.0
Identities = 655/662 (98%), Gaps = 2/662 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagactgtacctcaagcaggtcaggaagcaggaactgattggcacagaggccat 64
||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 972 gaattcaagactggaactcaagcaggtcaggaagcaggaactgattgacacagaggccat 913
Query: 65 ggagggatgttacttactggcttgctcagctttctttcttatagaacccaaagctatcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 912 ggagggatgttacttactggcttgctcagctttctttcttatagaacccaaggctatcag 853
Query: 125 cccagggatggtaccacccacaaggggccctccccccttgatcactaattgagaaaatgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cccagggatggtaccacccacaaggggccctccccccttgatcactaattgagaaaatgc 793
Query: 185 cttacagctggatctcatggaggcatttcctcaactgaagctcctttctctgtgataact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cttacagctggatctcatggaggcatttcctcaactgaagctcctttctctgtgataact 733
Query: 245 ccagcttgtgtcaagttgacacacaaaaccaaccagtaaagtgaattttaagcaattact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ccagcttgtgtcaagttgacacacaaaaccaaccagtaaagtgaattttaagcaattact 673
Query: 305 gataaaaaatattcaattattattgaaagctcaccaactatggattt--aaaaaaaaatc 362
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 672 gataaaaaatattcaattattattgaaagctcaccaactatggatttaaaaaaaaaaatc 613
Query: 363 ttacactaaggtattaaagaaaataaaaggacagctaagtgaaactttatgaacattttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttacactaaggtattaaagaaaataaaaggacagctaagtgaaactttatgaacattttt 553
Query: 423 gaaactttatcattaaggataaagtaggtagaaaataaaacacagtataacaaaaacaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 552 gaaactttatcattaaggataaagtaggtagaaaataaaacacagtataacaataacaaa 493
Query: 483 acccagacttctcagtcagcaaggtatgtgctgtgcaggcaccaggacctgagctcagat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acccagacttctcagtcagcaaggtatgtgctgtgcaggcaccaggacctgagctcagat 433
Query: 543 cctaggcgcccaagtacaagcactgttctgcggagacaggcagagtcagagcttgctggg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cctaggcgcccaagtacaagcactgttctgcggagacaggcagagtcagagcttgctggg 373
Query: 603 ttcactctagctaactcctgagttcagtggaaaaccttgccttgaacagtaagtagacag 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttcactctagctaactcctgagttcagtggaaaaccttgccttgaacagtaagtagacag 313
Query: 663 tg 664
||
Sbjct: 312 tg 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1066
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1056
Effective search space: 690624
Effective search space used: 690624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_a01.g1 MSMg01no290_a01.g1 CHROMAT_FILE:
MSMg01no290_a01.g1 PHD_FILE: MSMg01no290_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:26 2005
(634 letters)
>mm_chr1_141209120_141210153
Length = 1034
Score = 1187 bits (614), Expect = 0.0
Identities = 629/634 (99%)
Strand = Plus / Plus
Query: 1 cacataaacaaaaatactaattcactaagccataggcaggtgttttaactaacatagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacataaacaaaaatactaattcactaagccataggcaggtgttttaactaacatagtca 260
Query: 61 ttcttgtcagctttccatcaattctgacttttcaggaacattatacctcttgttgaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgtcagctttccatcaattctgacttttcaggaacattatacctcttgttgaacag 320
Query: 121 ccatattggtttctgtcaaagcacaaaaacaatggcttcccactttgattgaatctcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatattggtttctgtcaaagcacaaaaacaatggcttcccactttgattgaatctcctt 380
Query: 181 tgtataaccccaaacctaatatttggggatactggaatataatctccactctgttcccag 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tgtataaccccaaacctaatatttggggatactggactataatctccactctgttcccag 440
Query: 241 aaaaatgcaaagtagctgtataaaatgcatcaatatacccaattcaaataacttcaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaatgcaaagtagctgtataaaatgcatcaatatacccaattcaaataacttcaaaag 500
Query: 301 aagaaaaggagataagagtatgaaatagcaatgggataatgaactattcttatgggtgag 360
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 501 aagaaaaggagataagagtatgaaatagaaatgggataatgaattattcttatgggtgag 560
Query: 361 gtaactacacaaatatattacagacaaacctatatgttcacagctcatattgattcctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaactacacaaatatattacagacaaacctatatgttcacagctcatattgattcctac 620
Query: 421 aggtcaacatgattagaaaacaagacatattacaagattaatctaaaaattaaggtaaga 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtcaacatgattagaaaataagacatattacaagattaatctaaaaattaaggtaaga 680
Query: 481 gtgagaggccaaacttattccatcttggaactggcctctgtcttaaaagaaaagaaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgagaggccaaacttattccatcttggaactggcctctgtcttaaaagaaaagaaaaac 740
Query: 541 aaagacaaaaagcttgagaacgtggcccacagctgaattcactgcacccaggtaccagaa 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 aaagacaaaaagcttgagaacgtggcccacagctgaatccactgcacccaggtaccagaa 800
Query: 601 aggacctcatagcttgtccttggccagagttacc 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 aggacctcatagcttgtccttggccagagttacc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
