TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTCAGGTTCCCATTTTCTGTGTATGTCTGTAATTATAAATATA
ATTAATCCTACAAATGCATCTTTTCATATGTTCTGCTCATGTTTATGATG
GATGTTTATATTAAATTTTTGTAGTTCAAAGACCACTTTGTATTTGTTCA
ACACTAAAAACAGACCATGCTCATTCCAATTTTCATTACCCCACCAGTAA
AACATTAGTCTTCCACTCTCTTATTTTACAAGGGAGAATCAAAAGAGTTT
TTCCACTTGAGTGATGTAGATTGAATTACTTTTAATTTTTAATATGATGT
GTGTTGTTTGACTTTCCTTGACTTTGTGAAATCACTGTCCCTTTGAGATC
TAGCATGAGTTTATTTCTATCTCCCCAACTAAGTTCAAAAATATTTTTGT
GTAATCCGAGACAAACAATGTATTCATTTTATTACAAATTATTTATCTCT
GCTTTTGATAAACACTTTAGAATAATCATCTAATTATCTCCAAGTTATTT
AGGGTTAGGTAAACTCACTAGTCATTTTTAGTAACTAAATATTAAAATAA
AAATCACATCCTGCCCCCATTGTTTTATCAAGTTTATAAATACAAGTCTT
CTACTGGTGCATTTGTAACCCTATAAAATTTGTAGATAATACAGTGGAAG
GGAACTAGATATTCGAGTNAAATAGGGTGGGGATGTTGGCATTTCATTTT
TT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGACA
GAGAAGCACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAAAACA
AATCAAAACAACCCTGAGATTCCACCTCACATCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTGGAACAACCACTCTGGAA
ATCAGTCTGTCAGTTCCTCAGAAAATTGGACATAGTACTCCTGGAGGATC
CAGCAATACCTGTCCTGATTTTATATCCCCACCACGTCCCAACTGGTCAG
AAGGACATGCTCCACTATGTTCTTAGCAGCCTTATTTATAATATCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGATGAACCTGGAGGGTATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTGCT
AAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCC
CCTCN

Query= MSMg01no290_c17.b1 MSMg01no290_c17.b1 CHROMAT_FILE:
MSMg01no290_c17.b1 PHD_FILE: MSMg01no290_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:38 2005
         (707 letters)



>mm_chr1_144559925_144561031
          Length = 1107

 Score = 1301 bits (673), Expect = 0.0
 Identities = 696/706 (98%), Gaps = 6/706 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctcagg-t--tcccattttctgtgtatgtctgtaattataaatataattaat 61
           |||||||||||||| |  |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaattcatctcaggctggt---attttctgtgtatgtctgtaattataaatataattaat 851

                                                                       
Query: 62  cctacaaatgcatcttttcatatgttctgctcatgtttatgatggatgtttatattaaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cctacaaatgcatcttttcatatgttctgctcatgtttatgatggatgtttatattaaat 791

                                                                       
Query: 122 ttttgtagttcaaagaccactttgtatttgttcaacactaaaaacagaccatgctcattc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttttgtagttcaaagaccactttgtatttgttcaacactaaaaacagaccatgctcattc 731

                                                                       
Query: 182 caattttcattaccccaccagtaaaacattagtcttccactctcttattttacaagggag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 caattttcattaccccaccagtaaaacattagtcttccactctcttattttacaagggag 671

                                                                       
Query: 242 aatcaaaagagtttttccacttgagtgatgtagattgaattacttttaatttttaatatg 301
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 670 aatcaaaagagtttttccacttgagtgatatagattgaattacttttaatttttaatatg 611

                                                                       
Query: 302 atgtgtgttgtttgactttccttgactttgtgaaatcactgtccctttgagatctagcat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atgtgtgttgtttgactttccttgactttgtgaaatcactgtccctttgagatctagcat 551

                                                                       
Query: 362 gagtttatttctatctccccaactaagttcaaaaatatttttgtgtaatccgagacaaac 421
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 550 gagtttatttctatctccccaactaagttcaaaaatatttttgtgtaatttgagacaaac 491

                                                                       
Query: 422 aatgtattcattttattacaaattatttatctctgcttttgataaacactttagaataat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aatgtattcattttattacaaattatttatctctgcttttgataaacactttagaataat 431

                                                                       
Query: 482 catctaattatctccaagttatttagggttaggtaaactcactagtcatttttagtaact 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 catctaattatctccaagttatttagggttaggtaaactcactagtcatttttagtaact 371

                                                                       
Query: 542 aaatattaaaataaaaatcacatcctgcccccattgttttatcaagtttataaatacaag 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaatattaaaataaaaatcacatcctgcccccattgttttatcaagtttataaatacaag 311

                                                                       
Query: 602 tcttctactggtgcatttgtaaccctataaaatttgtagataatacagtggaagggaact 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcttctactggtgcatttgtaaccctataaaatttgtagataatacagtggaagggaact 251

                                                         
Query: 662 agatattcgagtnaaatagggtggggatgttggcatttcatttttt 707
           |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 250 agatattcgagtaaaatagggtggggatgttggcatttcatttttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)