BAC Information

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BAC

Clone NameMSMg01-290D18
Chromosome1 (Build37)
Map Location 116,061,702 - 116,062,040
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290D18.T7 (MSMg01no290_d18.b1)MSMg01-290D18.TJ (MSMg01no290_d18.g1)
ACCAG419571AG419572
length738740
length of high quality
(start - end)		653 (47 - 699)339 (389 - 727)
definitionCHROMAT_FILE: MSMg01no290_d18.b1 PHD_FILE: MSMg01no290_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:43 2005CHROMAT_FILE: MSMg01no290_d18.g1 PHD_FILE: MSMg01no290_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGATGACTACCGAATGGCTGAGAAGCACCTGAAAAAAGT
CTTCAGCATCCTTAATTATCAGGGAAATGAAAATCAAAACAACCCTGAGA
TTCTACTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGGTGCTGATAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGAATTTCAAGCTTGTACTACAACTCTGGAAATCACTGGTGGTTCCTCAG
AAAATTGGACATAGTACTACCAGAGGATCCCACAATACCCCTCCTGGGCA
TTTATCCAGAAGATGTTCCAACTTGTAAGAAGGACACATACTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAATAATCCAGATG
CCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAATGAATTTATGAAATTCCTAGGCAAATG
GTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGA
ACTGACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GAATGCCCAAGATATAAGGAACAGATGTTTTTTTGTTTTTTTTTTGTTTG
TTTGTTTGTTTGTTTGTTTGTTTTTTTCCACTCACCAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGATTGGCGATGACTGCAAGG
AAGATGGGGAAAAAGAACAAGGAAGGCCTACCAGAATATGCCTCAACCTT
GAGTACTGAGGAAGAAAACATGTATGCAGAGTTCAGGGTCACCTGTGTCC
AAATGTTCTTTGGTGATATCTGGGGAGGGGGGTGCAAAATAGCAGCCTCT
TCTCAAAATTAATCCATATCATAAGTTTTAACCTTGAGACTGCCTGTAAC
CAGAAGGGTTTTCAGCACCCTAATTTGGGATTCCTTGAAGTTGGGAAGAA
GAGAACCCATAATGACACTTTTTGATGCCCTCGCCACAAAATCAAACAAT
GAACAGATGAGACAGATAGGACTGACTAGGTGACAAAAGTCTCATACAAG
GCAGGGGAATCCCACACAGTATAGCTCAAAGGTTGTGTGCCTTCACAATG
TCCCTGATATGGAAAGGGCATTTGGAAGCCTATTCCCATACCATGGCCCG
AGAGAACAGCCTCTTTGTAAGGTACTGGGATGAATACAAGGGAAGTGAAA
GTGAGTTTCTTGTAGAAACAAGCAAGGACAAAGAAGACAGAGTAAATGCC
CACAAACTCAGCCTCAAATGGAAACCTAAAGTGAATGCATGTCAGTTGCC
AGGGTGAGCAGACAAAATAAGAGAAAGTACAAAGAANAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_d18.g1 MSMg01no290_d18.g1 CHROMAT_FILE:
MSMg01no290_d18.g1 PHD_FILE: MSMg01no290_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:43 2005
         (339 letters)



>mm_chr1_116061502_116062240
          Length = 739

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcaaacaatgaacagatgagacagataggactgactaggtgacaaaagtctcataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatcaaacaatgaacagatgagacagataggactgactaggtgacaaaagtctcataca 260

                                                                       
Query: 61  aggcaggggaatcccacacagtatagctcaaaggttgtgtgccttcacaatgtccctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaggggaatcccacacagtatagctcaaaggttgtgtgccttcacaatgtccctgat 320

                                                                       
Query: 121 atggaaagggcatttggaagcctattcccataccatggcccgagagaacagcctctttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggaaagggcatttggaagcctattcccataccatggcccgagagaacagcctctttgt 380

                                                                       
Query: 181 aaggtactgggatgaatacaagggaagtgaaagtgagtttcttgtagaaacaagcaagga 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtactgggatgaatacaagcgaagtgaaagtgagtttcttgtagaaacaagcaagga 440

                                                                       
Query: 241 caaagaagacagagtaaatgcccacaaactcagcctcaaatggaaacctaaagtgaatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagaagacagagtaaatgcccacaaactcagcctcaaatggaaacctaaagtgaatgc 500

                                                  
Query: 301 atgtcagttgccagggtgagcagacaaaataagagaaag 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtcagttgccagggtgagcagacaaaataagagaaag 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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