Query= MSMg01no290_l11.b1 MSMg01no290_l11.b1 CHROMAT_FILE:
MSMg01no290_l11.b1 PHD_FILE: MSMg01no290_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:21 2005
(578 letters)
>mm_chr1_178191400_178192376
Length = 977
Score = 1056 bits (546), Expect = 0.0
Identities = 564/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Plus
Query: 9 gaattcagtcttctgcacgtctccaacgatcaaagtggaaacaccttaaagagcaaacga 68
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 209 gaattcagtcttctgcaggtctccaacgatcaaagtggaaacaccttaaagagcaaagga 268
Query: 69 aaactagatgataattccggtatcagagaaacaccaggtgctgggaagatgactcagaga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaactagatgataattccggtatcagagaaacaccaggtgctgggaagatgactcagaga 328
Query: 129 ttaagaatgtgtactgttcttgcagagggcccaaattaggttccaacatcaacatcaggt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttaagaatgtgtactgttcttgcagagggcccaaattaggttccaacatcaacatcaggt 388
Query: 189 ggatcacacccacctgtgactccaactccagaggaatctaatgccttgggcctctaaggg 248
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 389 ggatcacacccacctgtgactccacctccagaggaatctaatgccttgggcctctaaggg 448
Query: 249 cggcagcactcaagagcacagactgacactaagacccaaacatgcatgcacctgtatcac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cggcagcactcaagagcacagactgacactaagacccaaacatgcatgcacctgtatcac 508
Query: 309 atatatgcttactcaaaaattagagtaaatcattttgaccatataaacatagaggagttc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atatatgcttactcaaaaattagagtaaatcattttgaccatataaacatagaggagttc 568
Query: 369 tactaatgataacaaaaagtggacaaatgaatattagagggaaaaaagataaatctccct 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tactaatgataacaaaaagtggacaaatgaatattagagggaaaaaagataaatctccct 628
Query: 429 aaaaatatattgaaaaaataaatgccatttctctttattccaggagatgttgaatgttgg 488
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 629 aaaaatatattgaaaaaataaatgccatttctctttattccaggagctgttgaatgttgg 688
Query: 489 agtttgggacttaattttggacactaagcatgaaaaaaaaaaagaaaaaattaacaatgt 548
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 689 agtttgggacttaattttggacactaagcatgaaaaaaaaga-gaaaaaattaacaatgt 747
Query: 549 tacagtgagaaaacttgccagatacttggg 578
||||||||||||||||||||||||||||||
Sbjct: 748 tacagtgagaaaacttgccagatacttggg 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space: 549256
Effective search space used: 549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_l11.g1 MSMg01no290_l11.g1 CHROMAT_FILE:
MSMg01no290_l11.g1 PHD_FILE: MSMg01no290_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:21 2005
(644 letters)
>mm_chr1_178360123_178361168
Length = 1046
Score = 1145 bits (592), Expect = 0.0
Identities = 632/646 (97%), Gaps = 2/646 (0%)
Strand = Plus / Minus
Query: 1 agttataaaacttaaagatatctgttatctctcttgtcttttcaacatgccctgctaaag 60
|||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 846 agttataaaacttaaagatatctgttatctctcttgtcttttcagcacgagctgctaaag 787
Query: 61 aggaaatgattcttaaaagc--tttttttgttggaaaatattcaagagactattgatcac 118
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 786 aggaaatgattcttaaaagctttttttttgttggaaaatattcaagagactattgatcgc 727
Query: 119 gtctcaattttatgcatcagaatcattactttcaggccaccaggacaaaaataagtgagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gtctcaattttatgcatcagaatcattactttcaggccaccaggacaaaaataagtgagg 667
Query: 179 acacaggcagagttttcatcttgctcaatgtggacagattgaaaattacgttacttaaaa 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 666 acacaggcagagttttcatcttgctcaatgtggacagattgaaaattacgttacctaaaa 607
Query: 239 tcatgctgactacacagagacaactttatggccaaattgtcacgtacagctgacgacaag 298
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 606 tcatgctgactacacagagacaagtttatggccaaactgtcacgtacagctgacgacaag 547
Query: 299 acattagagcaccagtcacctggactccttggcagcaatctatcatttatatggagggtc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 acattagagcaccagtcacctggactccttggcagcaatctatcatttatatggagggtc 487
Query: 359 tggatggcttgctgatggcgagttcaggaaggcatggcgggggcagcaaggtgctcaatc 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 486 tggatggcttgctgatggcgagttcaggaagacatggcgggggcagcaaggtgctcaatc 427
Query: 419 cggagtcgacgggaggcgtggccacctgtgcatcagcgtggagtctccttttctccagat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cggagtcgacgggaggcgtggccacctgtgcatcagcgtggagtctccttttctccagat 367
Query: 479 gatgcacgtgttagcacagatctcacctttcccaagaaaagttgttacatctttgctaat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gatgcacgtgttagcacagatctcacctttcccaagaaaagttgttacatctttgctaat 307
Query: 539 gagatcttttgaggaacttggtcacacctcttcagtttaattatcataccacactgaaat 598
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaggtcttttgaggaacttggtcacacctcttcagtttaattatcataccacactgaaat 247
Query: 599 gacttctttccttttcctgctctcctaccgagaacaaatatcgacg 644
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 246 gacttctttccttttcctgctctcctactgagaacaaatatcgacg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1046
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1036
Effective search space: 656824
Effective search space used: 656824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
