Query= MSMg01no290_m23.b1 MSMg01no290_m23.b1 CHROMAT_FILE:
MSMg01no290_m23.b1 PHD_FILE: MSMg01no290_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:27 2005
(631 letters)
>mm_chr1_39605861_39606891
Length = 1031
Score = 1193 bits (617), Expect = 0.0
Identities = 628/633 (99%), Gaps = 3/633 (0%)
Strand = Plus / Plus
Query: 1 gaagagaggccccttggtctagcaaactttatatgccccagtacaggggaacgcccgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaagagaggccccttggtctagcaaactttatatgccccagtacaggggaacgcccgggc 257
Query: 61 caagaagtgggagtgagtgggtaggggagcaaggcagggggagggtatatgggacttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 caagaagtgggagtgagtgggtaggggagcaaggcagggggagggtatatgggacttttg 317
Query: 121 ggatagcatttgaaatgtaaatgaagaaaatatctaataaacaaagaaaaaagccgggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggatagcatttgaaatgtaaatgaagaaaatatctaataaacaaagaaaaaagccgggca 377
Query: 181 tggtggcgaaagcctttaatcccagtacttgggaggcagagtcaggcggatttctgagtt 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tggtggcgcaagcctttaatcccagtacttgggaggcagagtcaggcggatttctgagtt 437
Query: 241 cgaggccagcctggtctacaaagtgagttccaggacagccagggctatacagagaagccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgaggccagcctggtctacaaagtgagttccaggacagccagggctatacagagaagccc 497
Query: 301 tgtcttgaaccaccccccccc---aataaaaaaaagaaaaaaagaaaaaattaaaaaaaa 357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgtcttgaaccaccccccccccccaataaaaaaaagaaaaaaagaaaaaattaaaaaaaa 557
Query: 358 agaaaaaggtcttttgtaatgactagctgttagaatgattatagcattttctctggtatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agaaaaaggtcttttgtaatgactagctgttagaatgattatagcattttctctggtatg 617
Query: 418 tcttaaaaacatagcactaatctacttgatacctaattcatgctttcctatttgcactga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcttaaaaacatagcactaatctacttgatacctaattcatgctttcctatttgcactga 677
Query: 478 acacaatgaagtttggtgataacttgtaaaaccaactttgaaactctctaaaaagtgctc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acacaatgaagtttggtgataacttgtaaaaccaactttgaaactctctaaaaagtgctc 737
Query: 538 aaaataaaattttctacttcaatagctcatattcatctggtcatacatttctttcagtaa 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaaataaaattttctacttcaacagctcatattcatctggtcatacatttctttcagtaa 797
Query: 598 aattcaccacatattttactatgagtagctaaa 630
|||||||||||||||||||||||||||||||||
Sbjct: 798 aattcaccacatattttactatgagtagctaaa 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_m23.g1 MSMg01no290_m23.g1 CHROMAT_FILE:
MSMg01no290_m23.g1 PHD_FILE: MSMg01no290_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:27 2005
(653 letters)
>mm_chr1_39770496_39771547
Length = 1052
Score = 1164 bits (602), Expect = 0.0
Identities = 641/654 (98%), Gaps = 3/654 (0%)
Strand = Plus / Minus
Query: 1 tttgtcttaatgtttcccttagaatccactccagagatgccaaggttctcccattaagtt 60
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 852 tttgtcttaatgtttcccttagaatccactcaagagatgccaaggttctaacattaagtt 793
Query: 61 tggctggcaagttgcctagagaataggccagtggaagggaccgattgttgggaatgtatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tggctggcaagttgcctagagaataggccagtggaagggaccgattgttgggaatgtatc 733
Query: 121 ctgtgtgccaaagctgcgctaaacggggaagggaaaggaaggggaaaggatatgaccaca 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctgtgtgccaaagctgctctaaacggggaagggaaaggaaggggaaaggatatgaccaca 673
Query: 181 aaccatgtttacaagagaaacaacaaaatatccaattctcacttcctccctcctcccccg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaccatgtttacaagaaaaacaacaaaatatccaattctcacttcctccctcctcccccg 613
Query: 241 gggactgagttgattcccaaggagttcctgcacagatgattcggga-cgggcgtgctctg 299
||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 612 gggactgagttgattccgaaggagttcctgcacagatgattcaggatc-ggcgtgctctg 554
Query: 300 tgtggtgctcattctggctgcaaaccgtatcttccacagattggggagtttccggaggtt 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgtggtgctcattctggccgcaaaccgtatcttccacagattggggagtttccggaggtt 494
Query: 360 ggcttcctctgctaaaataacatcaacgactgtgtctctgattagaatcagattgcgtct 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggcttcctctgctaaaataacgtcaacgactgtgtctctgattagaatcagattgcgtct 434
Query: 420 cctttgtgagcagtgtggaaattgaaaagtgttaagaagggaaaaaaaataaagactggc 479
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 433 cctttgtgagcagtgtggaaatcgaaaagtgttaagaagggaaaaaaa-taaagactggc 375
Query: 480 tgaggccccacccccaaaggtgtacttgctcccatggtccatttgtacacgtgtgcacac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgaggccccacccccaaaggtgtacttgctcccatggtccatttgtacacgtgtgcacac 315
Query: 540 acactagtgtgaacagcaagcaggagctgggaggaagcacagccttcatatcctgccctt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acactagtgtgaacagcaagcaggagctgggaggaagcacagccttcatatcctgccctt 255
Query: 600 gtccctgtgtcctgccatctgtctccttctgtcctgacaagctggtgagcaagc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtccctgtgtcctgccatctgtctccttctgtcctgacaagctggtgagcaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
