BAC Information

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BAC

Clone NameMSMg01-290N04
Chromosome1 (Build37)
Map Location 123,048,567 - 123,228,587
singlet/doubletdoublet
Overlap geneInsig2
Upstream gene3110009E18Rik, Steap3, C1ql2, Marco, En1, AI848258
Downstream geneCcdc93, LOC100041926, Htr5b, LOC666656, Ddx18, LOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290N04.T7 (MSMg01no290_n04.b1)MSMg01-290N04.TJ (MSMg01no290_n04.g1)
ACCAG419997AG419998
length739740
length of high quality
(start - end)		611 (44 - 654)582 (73 - 654)
definitionCHROMAT_FILE: MSMg01no290_n04.b1 PHD_FILE: MSMg01no290_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:28 2005CHROMAT_FILE: MSMg01no290_n04.g1 PHD_FILE: MSMg01no290_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,048,567 - 123,049,173)(123,228,070 - 123,228,587)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGTAATGTCATTTAAATGATCACAGCTCAGCCTTGAGTGGACAGA
AAACCAACTGTAACATTGACTGCATTGCAGGCTTCTGGAAACAGAGGAAA
TGATAAATTCCTCCAGAGCCAAACAAGCTACGGGTGGTCATAAAATGACT
CTGGCTTGAGAATTGGGATGCTAAGTTCTGATCCTTTCTGGAATCAATTT
TCTACCTGATGTTAAACAAGTCCTTTACCTTTCAAGAGTAAAATTAAGGT
GCAAATTAAGAGTAAAAACGAGGTGTCCTCAAGAATCTATTAATTTCTAT
TATTCCCAAATAACTCTATGTCCTCCTGCACAAACATTTGTGCATGTGTA
TTTATTGCTGCATTAGCCATGGTAGTTAGGAAATGGAACCAGCCTAGATG
TCTGCCAGCAGATGGATGGATAACCAACTGTGCCTATGGGCAACAGAATC
ATATTCAGCCATGAAGCAAAAGGAAATTATGAAAATTTCAGGAAAATGGA
TAATTAAAAATATTAAACACTGTACCCCAGACTCAAAAACACACTGTGTG
TTCTCCCTTGTGTGTAGATCTTAATCTTTCAAAGTGATTTTAGGAAGGAC
CAGAATGCAGAGCTCTGACTTGCAAATCGGCCATCCCTTAACTTCTGGGG
ATGCAAATGAAGGTATGCCTCATATAACCAGAAATGAGN

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGGCTGCAGAGATGGTTCAGTACAGT
GCTGGCCACGGAAGAGTGAATGAATCAACCCTATGAAACCTGGGGATGGT
AGCATGGACTTGTAATCCCAGTGCCGAGGAGGCAGAAACAGGAGGGTCCC
TGAGGCTTGCTGGCCAGCCAGGAGAGCCAAGTTCACGAGCTTCAGGGTGA
GTGAGAGACCTTGTCTCAAAAACTATGGTAGGGTGGGAATGAGAAAGACA
CCAAGTATCACTTCTTGGCACACACATGCACATACATGTACTAAACGTGT
GCCTGTGTACACATGTTTGCCTCCCACCCCCCATACAAACCACAGTACCT
GACACACAATACAGGGCCAATCATGATGCTAATATATAGCCTTCAGTTGT
AGCTTTTTCCATCTTTGATTATTATCTTCCTCCCCTCTTCCCTCCACTCA
TCCTTGAGACTCAGTCTTTCTGCCAACTCTGGGAACACACTGAGTTTCCA
GCTATTGTATCTTCAGAGTTATTCTTCTGCCTGCCCTCCGCAGATCCTTC
ACAGTTTTCAACTCTGACTTGAAATCACATTTAGTCTCCAAGTATCTCTG
TTAATTNCAGGTACATCTTGTTAACACTTGTGGTTTGAATATGCAGTATC
TCCCCCAGGCTCATGTGTTTGGACACTGTTTCCAGCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_n04.b1 MSMg01no290_n04.b1 CHROMAT_FILE:
MSMg01no290_n04.b1 PHD_FILE: MSMg01no290_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:28 2005
         (611 letters)



>mm_chr1_123048363_123049373
          Length = 1011

 Score = 1120 bits (579), Expect = 0.0
 Identities = 600/607 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgtaatgtcatttaaatgatcacagctcagccttgagtggacagaaaaccaa 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtaacgttatttaaatgatcacagctcagccttgagtggacagaaaaccaa 264

                                                                       
Query: 65  ctgtaacattgactgcattgcaggcttctggaaacagaggaaatgataaattcctccaga 124
           ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtaacattgactgtattgtaggctcctggaaacagaggaaatgataaattcctccaga 324

                                                                       
Query: 125 gccaaacaagctacgggtggtcataaaatgactctggcttgagaattgggatgctaagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccaaacaagctacgggtggtcataaaatgactctggcttgagaattgggatgctaagtt 384

                                                                       
Query: 185 ctgatcctttctggaatcaattttctacctgatgttaaacaagtcctttacctttcaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgatcctttctggaatcaattttctacctgatgttaaacaagtcctttacctttcaaga 444

                                                                       
Query: 245 gtaaaattaaggtgcaaattaagagtaaaaacgaggtgtcctcaagaatctattaatttc 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 gtaaaattaaggtgcaaattaagagtaaaaacgatgtgtcctcaagaatctattaatttc 504

                                                                       
Query: 305 tattattcccaaataactctatgtcctcctgcacaaacatttgtgcatgtgtatttattg 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 tattattcccaaataactctatgtcctcctgcagaaacatttgtgcatgtgtatttattg 564

                                                                       
Query: 365 ctgcattagccatggtagttaggaaatggaaccagcctagatgtctgccagcagatggat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgcattagccatggtagttaggaaatggaaccagcctagatgtctgccagcagatggat 624

                                                                       
Query: 425 ggataaccaactgtgcctatgggcaacagaatcatattcagccatgaagcaaaaggaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggataaccaactgtgcctatgggcaacagaatcatattcagccatgaagcaaaaggaaat 684

                                                                       
Query: 485 tatgaaaatttcaggaaaatggataattaaaaatattaaacactgtaccccagactcaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatgaaaatttcaggaaaatggataattaaaaatattaaacactgtaccccagactcaaa 744

                                                                       
Query: 545 aacacactgtgtgttctcccttgtgtgtagatcttaatctttcaaagtgattttaggaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacacactgtgtgttctcccttgtgtgtagatcttaatctttcaaagtgattttaggaag 804

                  
Query: 605 gaccaga 611
           |||||||
Sbjct: 805 gaccaga 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_n04.g1 MSMg01no290_n04.g1 CHROMAT_FILE:
MSMg01no290_n04.g1 PHD_FILE: MSMg01no290_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:28 2005
         (582 letters)



>mm_chr1_123227606_123228587
          Length = 982

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 65  aacctggggatggtagcatggacttgtaatcccagtgccgaggaggcagaaacaggaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 aacctggggatggtagcatggacttgtaatcccagtgccgaggaggcagaaacaggaggg 923

                                                                       
Query: 125 tccctgaggcttgctggccagccaggagagccaagttcacgagcttcagggtgagtgaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tccctgaggcttgctggccagccaggagagccaagttcacgagcttcagggtgagtgaga 863

                                                                       
Query: 185 gaccttgtctcaaaaactatggtagggtgggaatgagaaagacaccaagtatcacttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaccttgtctcaaaaactatggtagggtgggaatgagaaagacaccaagtatcacttctt 803

                                                                       
Query: 245 ggcacacacatgcacatacatgtactaaacgtgtgcctgtgtacacatgtttgcctccca 304
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 802 ggcacacacatgcacatacatgtactaaacgtgtgcctgtgtacacatgggtgcctccca 743

                                                                       
Query: 305 ccccccatacaaaccacagtacctgacacacaatacagggccaatcatgatgctaatata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccccccatacaaaccacagtacctgacacacaatacagggccaatcatgatgctaatata 683

                                                                       
Query: 365 tagccttcagttgtagctttttccatctttgattattatcttcctcccctcttccctcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tagccttcagttgtagctttttccatctttgattattatcttcctcccctcttccctcca 623

                                                                       
Query: 425 ctcatccttgagactcagtctttctgccaactctgggaacacactgagtttccagctatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctcatccttgagactcagtctttctgccaactctgggaacacactgagtttccagctatt 563

                                                                       
Query: 485 gtatcttcagagttattcttctgcctgccctccgcagatccttcacagttttcaactctg 544
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtatcttcagagttattcttcagcctgccctccgcagatccttcacagttttcaactctg 503

                                                 
Query: 545 acttgaaatcacatttagtctccaagtatctctgttaa 582
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acttgaaatcacatttagtctccaagtatctctgttaa 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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