BAC Information

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BAC

Clone NameMSMg01-290P18
Chromosome1 (Build37)
Map Location 41,729,462 - 41,729,815
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290P18.T7 (MSMg01no290_p18.b1)MSMg01-290P18.TJ (MSMg01no290_p18.g1)
ACCAG420113AG420114
length741737
length of high quality
(start - end)
354 (382 - 735)354 (384 - 737)
definitionCHROMAT_FILE: MSMg01no290_p18.b1 PHD_FILE: MSMg01no290_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:40 2005CHROMAT_FILE: MSMg01no290_p18.g1 PHD_FILE: MSMg01no290_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGAATGACGGGCATATTGTCCTTGATGATGTTGCTTTAGGAAT
CAGGCTTTTAGAAAAGCAGCATCCTTGATGCATTTGTCAGTAAATTGTGG
TTTTAATCATATTCTCAGAAAAATTACTATTGAATACCTCCAGAATTTGT
ATGGCATAGAACACATGATGTTTGACTTTATTAGCATATAAACTTTGAAC
CTGATAATCAAGGATCCTGCCCATATCCCTTTTAAAGAGCCCCTGTGATT
TTAGCTAAGTTACAAACTCCTGTCTGCAAAAGCAATACTGTAGAACTCCC
TGCTGCTTGTATTCTCTCATCTGCACCCAACATTGCAAAAGACCATTAAA
GAACAAAACTTTAATTCCTTTCTTTTCTTTTCCTTTTTGCCTCTGGATTC
AAAAGCAGAAACCTTGGTTGGATACATCTTAGAGTTACAATCAATTGAAA
ACCACCTTTTTCCCCTTTATAGTATATAAAAATGTTTTATATCAGAAGAA
AGTGTCAAGTATTATGTTGAAGCAAAATTCAAAATTATATATCTAATATG
CTTGTTTACAATGCATATGAAACATAATTGTTTGCTTCTTGTGGAAAAAG
TGTCTGTGATCTGAAAACCTCATAAAGCAACCCTGATCCACTGTGGTTAC
TTCAGTGAGGAGAGAAATGTGTCCTTGCATAAGAGATATCN
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGATGGGCCCCAAGAATGAGAGT
TTAACTCCTTGCCAGCTAGGGGAACTTGATGAAAGATGAGGAAAAAAGGG
GGAATCCCACTTTAAAAGGGGGGATTCTAATCTTTATTTCTAAGGGAAAG
TAGAAGGGGAATAACTATCTAAGGGAAATAACTATCAGATTATATGCTCT
TAATTTCTAAATTGCTCTTAATTTCTAAATTACTCTATTCTGCTGTCCTT
CTCCATCTCCTCCTAACCTTCTCCTTTCCTTTCTGACCTCTCCTTCTATT
ATAATGGAATCATTTTTATTTTGTCTCGCACTCTTCCTAGGAGAATAGAT
AGGAATAGATTTTCCAAGCATCCTTTCTTTTACAGAAGTTCACTAAAAGA
TCAAACATAAATTCAAACCATAAATTGAATAAGAAGTTTACAACAGAGAT
GTTTATACACGTTACCATTAAGACTAGTTATCCAGCTAGAAATTCATTAT
CTATCACCAACTCCACAGGTTCATTGAGAATTTAAAACTATAATTCTTGT
GACTAAGTTAACATTGCAGTTTTGTATAGATAAACACGTCAATATTTTAT
CTTATGTGCTTGCACCTTCAATAAATCCTTAGTTCCCTTTTATAACCTTT
GGCTAATTGTTTTACAAACTCTAGGAATGGGCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_p18.b1 MSMg01no290_p18.b1 CHROMAT_FILE:
MSMg01no290_p18.b1 PHD_FILE: MSMg01no290_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:40 2005
         (354 letters)



>mm_chr1_41729262_41730015
          Length = 754

 Score =  661 bits (342), Expect = 0.0
 Identities = 351/354 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaaaagaccattaaagaacaaaactttaattcctttcttttcttttcctttttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attgcaaaagaccattaaagaacaaaactttaattcctttcttttcttttcctttttgcc 495

                                                                       
Query: 61  tctggattcaaaagcagaaaccttggttggatacatcttagagttacaatcaattgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tctggattcaaaagcagaaaccttggttggatacatcttagagttacaatcaattgaaaa 435

                                                                       
Query: 121 ccacctttttcccctttatagtatataaaaatgttttatatcagaagaaagtgtcaagta 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccaccttttccccctttatagtatataaaaatgttttatatcagaagaaagtgtcaagta 375

                                                                       
Query: 181 ttatgttgaagcaaaattcaaaattatatatctaatatgcttgtttacaatgcatatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 374 ttatgttgaagcaaaattcaaaattatatatctaatatgcttggtaacaatgcatatgaa 315

                                                                       
Query: 241 acataattgtttgcttcttgtggaaaaagtgtctgtgatctgaaaacctcataaagcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acataattgtttgcttcttgtggaaaaagtgtctgtgatctgaaaacctcataaagcaac 255

                                                                 
Query: 301 cctgatccactgtggttacttcagtgaggagagaaatgtgtccttgcataagag 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cctgatccactgtggttacttcagtgaggagagaaatgtgtccttgcataagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)