BAC Information

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BAC

Clone NameMSMg01-291E01
Chromosome1 (Build37)
Map Location 81,983,510 - 82,167,783
singlet/doubletdoublet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291E01.T7 (MSMg01no291_e01.b1)MSMg01-291E01.TJ (MSMg01no291_e01.g1)
ACCAG420303AG420304
length740717
length of high quality
(start - end)
673 (68 - 740)428 (125 - 552)
definitionCHROMAT_FILE: MSMg01no291_e01.b1 PHD_FILE: MSMg01no291_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:00 2005CHROMAT_FILE: MSMg01no291_e01.g1 PHD_FILE: MSMg01no291_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,983,510 - 81,984,182)(82,167,356 - 82,167,783)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGTTCTCCTCTCTCAAAAGCTCAAGATAGCACTTATCTCACTCA
GAGTCCTGACAGTAGTGGGACCCGGAGTCTCTTTCAACATCACAATTCTG
AGAAATGCCAAGTGTGGCAGAGGCTGGATCAGTTGGAAGGCCGGGGTGGA
CAGTGTGGTGAGGAATCTTGACTGTCCCCTCCACCAGCATTCCTCCCCTG
CCTAATGGTAAGATAATTTCTGCCTTTGCTTGTAACTAGAATCACAGAAC
AACCACATTTGCAGTCTCTTTTGTGATAGAATAAAAGCAGAAATTATCTA
CAAACAGATTACTTGCTGAGTCCTTAAGAGAAAATGCTAGTCTTCCTTTG
CCTCCATTCCAGGATCTATAAATATGGACAAATCAACATACAAGTTTAAT
CATGCCCAGGTGGGCAATAATGCAGTTGATAGAAGAAGAAAATGTGTGAG
TACCAGACCTTGACCACCCAGAAGGCAGAGCATCATGCAAGCCCAACAAA
CAACAACAAAAACGCTGTTTTCAAATATGTAAATCACATTCAATCAAGAC
TCCTCATGTTGCATTTCTAAATAAAATTTCAGAAATCAAATGTACAGAGT
AGGGTTGTTCTAATCTTGGACTAAGACACCAAGCAATGGCAGAGTCCTAC
CATGACTCAGACACCACTTAAAGTCCCTTTTCACATGTGG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGAGCAAGGACAGTGGGGAGAGCAA
AGAGAGGATGGGAATATGAACAAGCCACCAGGATTTGTGACCCTGTCAGT
CTCAGCCACGGACACCTCGTGCTCAACATAGAGACCCTTTCCTCTGGAAA
ATGAAACAGAAACATAGGGAATTTGGGACAGCAGAGGGTAGAGGGCTGCT
TCAAGAAAGAGAGAACAGAATCTTGGGAATTACTGAGCAAAGCTCTTATA
AATGTCTCAGAATTGGACATCTCAACTCAGGAGATAGGTGGGAAGTATTT
CTCCATTGGCTCCTAGACAGCTGTGGTAGTGAATGGCTTGTGTGCATAGG
GCCATTTTGGTTGTTTGTGATGGGCAATCCATTCTTGTGGAAAAACTGTC
TTGTGGTGTCAGGGAAGCCACTAATAGGAAGGAGAGGCTCTAGGCACTGG
GCTGAGGTGAGGCACTGGCAATTGGCACCTATGTGAGCCTTGGCACAGCT
CTGCAGACCGACTTCCNTCAATAATAGCGGGAGGAAAAGGTGGTTCAGTA
TGTTATGCATTCACATAGGGCTATTCAGATCTCTGTGGAAAATTGTTCTC
CTAACTGGAATCCCTTAACAAATTTGCCCAAAGTCCCCGGAAAACAAAGA
AACGCTTTCTCTTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_e01.b1 MSMg01no291_e01.b1 CHROMAT_FILE:
MSMg01no291_e01.b1 PHD_FILE: MSMg01no291_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:00 2005
         (673 letters)



>mm_chr1_81983310_81984382
          Length = 1073

 Score = 1224 bits (633), Expect = 0.0
 Identities = 663/673 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaaaagctcaagatagcacttatctcactcagagtcctgacagtagtgggacccggag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct: 201 ctcaaaagctcaagatagcatttatctcactcagagtcctgacagtagtgggatccagag 260

                                                                       
Query: 61  tctctttcaacatcacaattctgagaaatgccaagtgtggcagaggctggatcagttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctttcaacatcacaattctgagaaatgccaagtgtggcagaggctggatcagttgga 320

                                                                       
Query: 121 aggccggggtggacagtgtggtgaggaatcttgactgtcccctccaccagcattcctccc 180
           |||||||||| |||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct: 321 aggccggggtagacagtgtggtgaggagtcttgactgtcccgtctaccagcattcctccc 380

                                                                       
Query: 181 ctgcctaatggtaagataatttctgcctttgcttgtaactagaatcacagaacaaccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcctaatggtaagataatttctgcctttgcttgtaactagaatcacagaacaaccaca 440

                                                                       
Query: 241 tttgcagtctcttttgtgatagaataaaagcagaaattatctacaaacagattacttgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgcagtctcttttgtgatagaataaaagcagaaattatctacaaacagattacttgct 500

                                                                       
Query: 301 gagtccttaagagaaaatgctagtcttcctttgcctccattccaggatctataaatatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtccttaagagaaaatgctagtcttcctttgcctccattccaggatctataaatatgg 560

                                                                       
Query: 361 acaaatcaacatacaagtttaatcatgcccaggtgggcaataatgcagttgatagaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaatcaacatacaagtttaatcatgcccaggtgggcaataatgcagttgatagaagaa 620

                                                                       
Query: 421 gaaaatgtgtgagtaccagaccttgaccacccagaaggcagagcatcatgcaagcccaac 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaatgtgtgaataccagaccttgaccacccagaaggcagagcatcatgcaagcccaac 680

                                                                       
Query: 481 aaacaacaacaaaaacgctgttttcaaatatgtaaatcacattcaatcaagactcctcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaacaacaacaaaaacgctgttttcaaatatgtaaatcacattcaatcaagactcctcat 740

                                                                       
Query: 541 gttgcatttctaaataaaatttcagaaatcaaatgtacagagtagggttgttctaatctt 600
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtttcatttctaaataaaatttcagaaatcaaatgtacagagtagggttgttctaatctt 800

                                                                       
Query: 601 ggactaagacaccaagcaatggcagagtcctaccatgactcagacaccacttaaagtccc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 801 ggactaagacaccaagcaatggcagagtcctaccatgactcagacaccatttaaagtccc 860

                        
Query: 661 ttttcacatgtgg 673
           |||||||||||||
Sbjct: 861 ttttcacatgtgg 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no291_e01.g1 MSMg01no291_e01.g1 CHROMAT_FILE:
MSMg01no291_e01.g1 PHD_FILE: MSMg01no291_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:00 2005
         (428 letters)



>mm_chr1_82167156_82167983
          Length = 828

 Score =  820 bits (424), Expect = 0.0
 Identities = 427/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaccaggatttgtgaccctgtcagtctcagccacggacacctcgtgctcaacatagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccaccaggatttgtgaccctgtcagtctcagccacggacacctcgtgctcaacatagaga 569

                                                                       
Query: 61  ccctttcctctggaaaatgaaacagaaacatagggaatttgggacagcagagggtagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccctttcctctggaaaatgaaacagaaacatagggaatttgggacagcagagggtagagg 509

                                                                       
Query: 121 gctgcttcaagaaagagagaacagaatcttgggaattactgagcaaagctcttataaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctgcttcaagaaagagagaacagaatcttgggaattactgagcaaagctcttataaatg 449

                                                                       
Query: 181 tctcagaattggacatctcaactcaggagataggtgggaagtatttctccattggctcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctcagaattggacatctcaactcaggagataggtgggaagtatttctccattggctcct 389

                                                                       
Query: 241 agacagctgtggtagtgaatggcttgtgtgcatagggccattttggttgtttgtgatggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agacagctgtggtagtgaatggcttgtgtgcatagggccattttggttgtttgtgatggg 329

                                                                       
Query: 301 caatccattcttgtggaaaaactgtcttgtggtgtcagggaagccactaataggaaggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 328 caatccattcttgtggaaaaactgtcttgtggtgtcagggaagccaccaataggaaggag 269

                                                                       
Query: 361 aggctctaggcactgggctgaggtgaggcactggcaattggcacctatgtgagccttggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggctctaggcactgggctgaggtgaggcactggcaattggcacctatgtgagccttggc 209

                   
Query: 421 acagctct 428
           ||||||||
Sbjct: 208 acagctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)