TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCACTGCTTAACCTACTCAATGTCACAAGCTATTGCCAAAGCCC
CTGACAGTTTTCTAAGCACAGAAGAATCTAATTTTAAAAGACTACTTAGA
TATTATACTCTTGAAAATTCAGAACTTTACATTTGAATATACTTTTCATT
TTCTCATCTCTCTGGGGTAAAGGACTGTGGGTGAGGGAAGGGCAGCAATC
CACAAAGCAGCAGACAATGATTAATATGCAGGTGCAAGGATGACTGCAGA
AAAAAGCAGCAGCAGCAGCTTATGTAACTGATAAAGTATTAGTCAGCAGG
ACCCTAATAACACCTCCCTGGACCCTGAGGCAGTGTAGCTGATCAATACT
TTAGAATAGCCTATTGTCTTCTATTGGCTTAGACAACAGAGAAAAATAAT
ACAGGAAAAAACCTTTCTGTATTCAAAGTAGCTGACAGATTGAAAGGTGA
ACAACATATATTGATTAATTTCACAAGATAATATAAATTACAAATTAGGA
TATATATTTTATTAGTATGATGCTGAATATCAGTTAATCTTTTCTTAAGG
ACCCTGACAGCATTTCTGTTTTTCATGCTATTTCTAAAATACATAGCAAC
AACTACATAATTCAATTAATTTAGAGTACAAGAGACATTAACGATATGTG
TCTTGGAACACATTTTAGGAGATATTATTAGTGATCAACCTC

ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGA
GAAGCACCTGAAAAAATGTTCACGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGACCC
CGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAATCCAGATATCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTATATTTACACAATGAAGTACTTCTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGAACCTGGAGGGCATCATCCTGAGT
GAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAAGGTACAATTTG
TAAAACACATGAAACTGAAGAACGAAGACCAAAGTGTGGACACTTTGG

Query= MSMg01no291_i06.b1 MSMg01no291_i06.b1 CHROMAT_FILE:
MSMg01no291_i06.b1 PHD_FILE: MSMg01no291_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:19 2005
         (698 letters)



>mm_chr1_162377508_162378602
          Length = 1095

 Score = 1311 bits (678), Expect = 0.0
 Identities = 689/694 (99%), Gaps = 3/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgcactgcttaacctactcaatgtcacaagctattgccaaagcccctgacagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcactgcttaacctactcaatgtcacaagctattgccaaagcccctgacagt 264

                                                                       
Query: 65  tttctaagcacagaagaatctaattttaaaagactacttagatattatactcttgaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctaagcacagaagaatctaattttaaaagactacttagatattatactcttgaaaat 324

                                                                       
Query: 125 tcagaactttacatttgaatatacttttcattttctcatctctctggggtaaaggactgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagaactttacatttgaatatacttttcattttctcatctctctggggtaaaggactgt 384

                                                                       
Query: 185 gggtgagggaagggcagcaatccacaaagcagcagacaatgattaatatgcaggtgcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggtgagggaagggcagcaatccacaaagcagcagacaatgattaatatgcaggtgcaag 444

                                                                       
Query: 245 gatgactgcagaaaaaagcagcagcagcagcttatgtaactgataaagtattagtcagca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatgactgcagaaaaaagcagcagcagcagcttatgtaactgataaagtattagtcagca 504

                                                                       
Query: 305 ggaccctaataacacctccctggaccctgaggcagtgtagctgatcaatactttagaata 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 ggaccctaataacacctccctggaccctgaggcggtgtagctgatcaatactttagaata 564

                                                                       
Query: 365 gcctattgtcttctattggcttagacaacagagaaaaataatacaggaaaaaacctttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcctattgtcttctattggcttagacaacagagaaaaataatacaggaaaaaacctttct 624

                                                                       
Query: 425 gtattcaaagtagctgacagattgaaaggtgaacaacatatattgattaatttcacaaga 484
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtattcaaagtagctgacaggttgaaaggtgaacaacatatattgattaatttcacaaga 684

                                                                       
Query: 485 taatataaattacaaattaggatatatattttattagtatgatgctgaatatcagttaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taatataaattacaaattaggatatatattttattagtatgatgctgaatatcagttaat 744

                                                                       
Query: 545 cttttcttaaggaccctgacagcatttctgtttttcatgctatttctaaaatacatagca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttttcttaaggaccctgacagcatttctgtttttcatgctatttctaaaatacatagca 804

                                                                       
Query: 605 acaactacataattcaattaatttagagtacaagagacattaacgatatgtgtcttggaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acaactacataattcaattaatttagagtacaagagacattaacgatatgtgtcttggaa 864

                                             
Query: 665 cacattttaggagatattattagtgatcaacctc 698
           |||||||||||||||||||   ||||||||||||
Sbjct: 865 cacattttaggagatatta---gtgatcaacctc 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1095
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1085
Effective search space:   746480
Effective search space used:   746480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)