BAC Information

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BAC

Clone NameMSMg01-291N17
Chromosome1 (Build37)
Map Location 150,692,280 - 150,692,452
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647, LOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291N17.T7 (MSMg01no291_n17.b1)MSMg01-291N17.TJ (MSMg01no291_n17.g1)
ACCAG420737AG420738
length735757
length of high quality
(start - end)		659 (70 - 728)179 (132 - 310)
definitionCHROMAT_FILE: MSMg01no291_n17.b1 PHD_FILE: MSMg01no291_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:45 2005CHROMAT_FILE: MSMg01no291_n17.g1 PHD_FILE: MSMg01no291_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTCTGTCTCAGAGTAAGACACTGATATGTGAGTATAGCAGAAC
ATCATTAGGAATCGTTTTATTGCTATAGCTTACTGTTTTACTATTATTAT
TACTTTATCCTTCTCATCTTCCTCCTCCTCCTTCTCATCATATTTATAAC
AGTAGTAATTAGTGTTACCATATATCTATGAGTTGTATAGTCTCAGATTC
TTGGTCACCCAAGCAGAGTTGGATATAGCTTTCATCTCGTGGAGTGGGTC
CTAAATCATTTTACATATCCATTGGTTACTCTTGCAAATTTTGTGCAACC
ATTGACCTAGCATAACTTGCAAACAGAAAACCATTGCAGATCAAAAAGTT
AATATGCCCATATAACCGAATTCATTTCGTAGTTGCCTTTATAATTCTGG
AATGCCCTTTTTCATCCATTTGCCTGTGAATTTCATGTCATATTTTAAAA
ATGTTGATTAATAATCCATTGCATATGTACCAAGTTTTCTTTACTCATTC
TTCTCTTTGAGGGACATGTAGGTTGTTTCTGAATTCCGGCTACTATTAAT
TGAGCAGCAATGAATATGCTTGAGCAAATTTCGCTATGGTAAAAGAAGTA
ACCTTTGGGCCTATGTCCAGTAGGGTAAAGCTGGCTATTAGATTGATTCC
CATCTTCATAAGCAACCACCTCATTGAAAACTTGT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCATCCTGAATGGTATGAACG
CAATTTACTAACTGAGCTATTTTCCCAGACTAGGATTCCTATTTTTTTTA
AACATAAATAAAGTGTTTTCTGTTGTCATTTTGATAGCTACTAATTTTCC
AGCACAAATAAGGACAATTAGAGACAAGGAAGATATGAAGAAGAACAACA
ACAAAGCAAGAAGGGAGGGGGAGATATAGAGATGTGTGTGTGTGTGTGTG
TGTGTGTNNNNNNNNNNNNNTTTTTTTTTTNNNNNNNNNNNTNNNNNNNN
NNNNNNNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTTCCCCCCCCCTTAAAAAAAAAAAAAAAGGGGGGGG
GGGGGTGGGGTCCCTCATACCTATTGTATTCCCTTTTTTTTCTTATCTGC
CCTGTTTTATCATCCGAATGGTAATACACATACGCATCATAGACCACCCT
CCTAGAAATTTTTTAAATGAAATCCCTTATCCGTTTAACGTTTCCGACAC
GCGCTTAGCACACATAGAAAAGAAAAATCTTTAGATACCTTGTGCTCTCT
ATGTTACATTTATTACTCTACTACTATTTTCTTTTTCCCTACTTTTCCTT
TTTACAATTTATATCTATGCATCATACCATCCACAATTAACTATCTATTT
TACTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_n17.g1 MSMg01no291_n17.g1 CHROMAT_FILE:
MSMg01no291_n17.g1 PHD_FILE: MSMg01no291_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:45 2005
         (179 letters)



>mm_chr1_150692102_150692680
          Length = 579

 Score =  311 bits (161), Expect = 1e-89
 Identities = 170/173 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   attcctattttttttaaacataaataaagtgttttctgttgtcattttgatagctactaa 63
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 351 attcctattttttttaaacatacataaagtgtttcctgttgtcattttgatagctactaa 292

                                                                       
Query: 64  ttttccagcacaaataaggacaattagagacaaggaagatatgaagaagaacaacaacaa 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 291 ttttccagcacaaataaggacaattagggacaaggaagatatgaagaagaacaacaacaa 232

                                                                
Query: 124 agcaagaagggagggggagatatagagatgtgtgtgtgtgtgtgtgtgtgtgt 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 agcaagaagggagggggagatatagagatgtgtgtgtgtgtgtgtgtgtgtgt 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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