Query= MSMg01no291_o06.b1 MSMg01no291_o06.b1 CHROMAT_FILE:
MSMg01no291_o06.b1 PHD_FILE: MSMg01no291_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:48 2005
(699 letters)
>mm_chr1_99471255_99472353
Length = 1099
Score = 1168 bits (604), Expect = 0.0
Identities = 671/698 (96%), Gaps = 12/698 (1%)
Strand = Plus / Plus
Query: 5 gaattcttttatggtactataagaaactgccccagatcaggggaaaagtccaaattcttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttatggtactataagaaactgccccagatcaggggaaaagtccaaattcttt 264
Query: 65 cacatgcatagcgcaccagtgtttggccactctattttcttgactaattcttactctcta 124
|||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 cacatgcaaagcgtaccagtgtttggccactctattttcttgaccaattcttactctcta 324
Query: 125 cttcaaaatatatttttggataccactttgccagaatgctactgaaaattcccttcctag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcaaaatatatttttggataccactttgccagaatgctactgaaaattcccttcctag 384
Query: 185 gctggcttccgaatgtctctaactcttgtcctttataggtactgtggatagcttctccag 244
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 gctggcttcccaatgtctctaactcttgacctttataggtactgtggatagcttctccag 444
Query: 245 tggactttccctctggtatggccatgtatatgttcatttctcacccagggcacttagcta 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 tggactttccctctggtatggccatgtatatgttcatttcttacccagggcacttagcta 504
Query: 305 tgcaagaccatctatattattgatatcctggactcacagcttccattcattaaatagata 364
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcgagaccaactatattattgatatcctggactcacagcttccattcattaaatagata 564
Query: 365 aacaccccacat---atatatatatatatatatatatatatatatatatatatatatata 421
||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacac---agattttatatatatatatatatatatatatatatatatatatatatatata 621
Query: 422 cattttaaaaactgcatttttaaatgcaaaattttttaaaaagtgtcttgatgtcctgaa 481
||||||||||||||||||| || | | ||| | |||||||||||||||||||||||
Sbjct: 622 tattttaaaaactgcatttt---at-ctacattgt--aaaaagtgtcttgatgtcctgaa 675
Query: 482 gtcacctgggaccacaggcagcattttcctctaagacctatgtccacacacaaagtagca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtcacctgggaccacaggcagcattttcctctaagacctatgtccacacacaaagtagca 735
Query: 542 gacccactagtttggaaagaggctcttgcttgcttgtttgctgacttgaggaaaacaagt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gacccactagtttggaaagaggctcttgcttgcttgtttgctgacttgaggaaaacaagt 795
Query: 602 acagatgccaattcaatggtgataatttgaagagccattacctgtgcgtgaccctggaaa 661
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 796 acagacgccaattcaatggtgatcatttgaagagccattacctgtgcgtgaccctggaaa 855
Query: 662 cacttctggctggtgagaagcaaaaccacagagctgtc 699
||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cacttctggctggtgagaagcaaaaccacagagctgtc 893
Score = 91.6 bits (47), Expect = 2e-22
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 375 atatatatatatatatatatatatatatatatatatatatatatata 421
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atatatatatatatatatatatatatatatatatatatatatatata 576
Score = 91.6 bits (47), Expect = 2e-22
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 375 atatatatatatatatatatatatatatatatatatatatatatata 421
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atatatatatatatatatatatatatatatatatatatatatatata 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 107
Number of extensions: 43
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 9
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_o06.g1 MSMg01no291_o06.g1 CHROMAT_FILE:
MSMg01no291_o06.g1 PHD_FILE: MSMg01no291_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:48 2005
(286 letters)
>mm_chr1_99525476_99526161
Length = 686
Score = 553 bits (286), Expect = e-162
Identities = 286/286 (100%)
Strand = Plus / Minus
Query: 1 tgataggtgctctgagaagacacctaattatagttggagttgctaccagtatttaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgataggtgctctgagaagacacctaattatagttggagttgctaccagtatttaaaact 427
Query: 61 gcaaagggtaagggcgtcgtgaatgtgtgctctgagctttatcttctcatgtgaaatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcaaagggtaagggcgtcgtgaatgtgtgctctgagctttatcttctcatgtgaaatgat 367
Query: 121 aataaattatgcgcaaaggcagaacagtgaggaaaacgcagtcttattacattgaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aataaattatgcgcaaaggcagaacagtgaggaaaacgcagtcttattacattgaattta 307
Query: 181 gaggatggctaattctgatggggttgaagtgttgctcatcctgaagtaggcatattagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaggatggctaattctgatggggttgaagtgttgctcatcctgaagtaggcatattagtg 247
Query: 241 ctgggaaaagtccttgaggcatgtggcatggaactgtgacatttac 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctgggaaaagtccttgaggcatgtggcatggaactgtgacatttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
