BAC Information

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BAC

Clone NameMSMg01-292C15
Chromosome1 (Build37)
Map Location 53,319,650 - 53,319,951
singlet/doubletsinglet
Overlap genePms1
Upstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
Downstream geneLOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2, 4930511H11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292C15.T7 (MSMg01no292_c15.b1)MSMg01-292C15.TJ (MSMg01no292_c15.g1)
ACCAG420959AG420960
length759761
length of high quality
(start - end)
272 (45 - 316)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no292_c15.b1 PHD_FILE: MSMg01no292_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:09 2005CHROMAT_FILE: MSMg01no292_c15.g1 PHD_FILE: MSMg01no292_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCCTCCCTTTCCCAAGAAAGAGATTTTTGTGAAGGGGCTCCCTGTAGA
CTTGGGGGCAGGAAGGGTTAAGGGAGCAACTAAGGGTTGTGTAAAAGGAG
AGAGTGCTTTATTTTGGGCTATAGTTCAAGGGGATGTACTCCATAATGGA
GGAGAAGGCAGGATGGCAGGGTAGGAGAGGGCTAGCTGCACTGCATCCAC
AGACAGGAAGCAAAGATTGATCAACAATGTGGCTCATTCTCCTTGGTACC
GAGGCGATGACATGCAGATTGTGTCTCCCGACCTCAGTTAACTGAATCTA
GACAATTTCACTCTTGCATTGCCTACAGGCTGAGCTGATTGATATGATCC
ACCACAGGCATGCCCACCCATGTGTTCCCAAGGTGATTCTGGATTCTCTC
AAGTTGACAGGATTGCCCATCTCAACCTCTTGCTTTGAGTTGAAGCTAGT
GCCTATAGATGTAAATGACAATGGGGACACACAAGAGGAATGGCTGGACT
AGCCAGAAGCATCAGGCAAGGCAAGGATGCTACAGTCTATATAGTCCACA
GGGTCGTTTGCAGTGCAGGGCAAGGCAGTATGCGAAAGGACAAAAATTAT
CAAAGATTTTTATGTAACATTTTCCCACCACCAAAACTTCTGGTGGCACC
TTCATAATAATTACCCCACTTTTTGTCCTTTCTGCACTTTTTTAATTGTT
TTTCGCATT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCGCTTACACACAGGACTTTTGCT
GACTGAGCAGTGCTGAAGAAACTTGAGACTGGACTATTCAAAGAGCTTTC
AGACTTACAAGAGGACATCGTCAAGCTACAGCACAGGTTGCTACTGGTTC
CTGTTTGACAGGAACACAACCATCTTCAGCAACTGTGATTCTTTTATGTA
AATCAAATCAAAGCTTTAAAGGACATGATCAAGGGAAAATAAGAGCTATC
AGCAAAAGAAAAAGTACAGCAGAGGCAGATGAGCAAAATGAGAACCCCTA
GGAAGAACTATTTGTCTTTAAGGCCCCCACCCACATCCTGTATCATTAAA
GAAAAAAGTTGGGAGCCCATATGCTAAATGAAAAGTTTGGAAGAACCAAA
TGAAAATTCTAGAAGTATAAAACCGTTATACCCAAGTATTCACTAGATGG
GTGACATAGTTAAGATCTCAATTGTCCCCTTTGTGAAAGGCTTGTTCACT
AGTAGGAGGGTCTTTCAGTCATTAGACATTAGGTACGCCCTGTAAGAGGC
TACTGGGTCCATATCCCTTTTTCTCTCTTTGCTTCCTAGTTGTTAAGACA
CAAGTTTTCTTGGCCACATGCACCAAGATGTACAGCTCACTGCATGGCCC
GAAGTATGGTGCCTTATGCACCTGATTAAAACCTCTTGCTACTATTTTTT
GGCATTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_c15.g1 MSMg01no292_c15.g1 CHROMAT_FILE:
MSMg01no292_c15.g1 PHD_FILE: MSMg01no292_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:09 2005
         (289 letters)



>mm_chr1_53319359_53320047
          Length = 689

 Score =  468 bits (242), Expect = e-136
 Identities = 281/302 (93%), Gaps = 13/302 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcgcttacacacaggacttttgctgactgagcagtgctgaagaaacttgagactggac 60
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 593 attcgcttacacacaggacttttgctgactgagcagtgctaaagaaagttgagactggac 534

                                                                       
Query: 61  tattcaaagagctttcagacttacaagagga-------------catcgtcaagctacag 107
           |||||||||||||||||||||||||||||||             |||| |||||||||||
Sbjct: 533 tattcaaagagctttcagacttacaagaggaaaaggattaattccatcatcaagctacag 474

                                                                       
Query: 108 cacaggttgctactggttcctgtttgacaggaacacaaccatcttcagcaactgtgattc 167
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cacaggttgttactagttcctgtttgacaggaacacaaccatcttcagcaactgtgattc 414

                                                                       
Query: 168 ttttatgtaaatcaaatcaaagctttaaaggacatgatcaagggaaaataagagctatca 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttttatgtaaatcaaatcaaagctttaaaggacatgatcaagggaaaataagagctatca 354

                                                                       
Query: 228 gcaaaagaaaaagtacagcagaggcagatgagcaaaatgagaacccctaggaagaactat 287
           ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 353 gcaaaagaaaaagcacagcggaggcagatgagcaaaatgagaacctctaggaagaactat 294

             
Query: 288 tt 289
           ||
Sbjct: 293 tt 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)