BAC Information

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BAC

Clone NameMSMg01-292C19
Chromosome1 (Build37)
Map Location 124,510,329 - 124,688,977
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292C19.T7 (MSMg01no292_c19.b1)MSMg01-292C19.TJ (MSMg01no292_c19.g1)
ACCAG420967AG420968
length771769
length of high quality
(start - end)		323 (46 - 368)298 (77 - 374)
definitionCHROMAT_FILE: MSMg01no292_c19.b1 PHD_FILE: MSMg01no292_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:10 2005CHROMAT_FILE: MSMg01no292_c19.g1 PHD_FILE: MSMg01no292_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,688,659 - 124,688,977)(124,510,329 - 124,510,622)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGTCATATTCGCCAAGCCCCTTCACCCACTGAGCCTTATTTCT
GGCCTGATGGAGATATTTTACACTCAACCTTCATGAAAGGTATTTTGGTA
ATATATAAAATTGAAAATAGCTATTTGCTTTAACTCGTGTGTTATTATAA
CTATGTTTTAAGTATGCACATATCTACACAATATCTACACAATAGAAGAC
ATTTATCTGTGAAAGAAAATAAAGAATTCAAGTTATGTATATAGTGATGA
AGTGGAACATTTGAAAGCATTGAATGTGCCAGTAGAAATGGAATAATGTG
AACAGCTTATGACATATGATGATGGCCTATGACATGAGATAAACAAACTA
GAATTGTCTTAAAGCTACAACTTCACTCTGAATTTACATGTTTTAAAAGG
ATAAGAAGAATTAGTTTACCTCAGCTCATTCTAAATTGGCCCCAAAGAGT
TAAGTGAGAGTTAAGTAATATTGCATTTTACAAAAACCCAAAAAGTATAG
AAATGTGGTGAACAGAAAATAGGCAGTATATAAATATGTAGGTAGAGGAT
AGAAAGACAGACAGATGATAGATAGATAATAAATAGACAGATAGATGGAT
AGATGACAGATAGATAGACATAGATGGATAGATGATACATAGATAGATAG
ATTGATAGCTTGATAGATCTTCTTCCTCTCTTTTTTTTTCTCTCTCCCTT
GTTTTTCTTTTTTTTTCTCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTTTAAAGGCACAGGAGTGA
GGTCTATTGCTGTGATTTGGTTCACAGGAAATATACAAATACAAATCTGC
CCCCACAAAACAAGGAGACTAGAGAGCACAGAACAGACGGTGAGGGGGAA
ATGGCAGGACGGGGATCCTTTTTGTGTTTTATTCATTTTCCACTGTTCTT
TCTAAGGTGGTCGATGCTTTTTAACATGGACACAGTCTTATAAAGACTCA
CCACTGTAGTAATGCCAACTCAGTCACACTCTCCCAAGACTTCTAAACTG
TTCATCATATCCAGTGTTTTCTTATACCGAACACCGACGAAAGAATGTAA
TTCAACCACATAAAACATGCCCCCCATTATTCCTCTTCTATATTTTAGTA
ACTAATTTTAAAAGCAGAACTGTCCTTTTCTGTCTCCAAAGTGAAGGTTC
CAAAACTTCTGCCAATGCATCAGCTGGATGAAATAAACAGTTCAATGAGG
CTTTTCTCCTTGAGTCCTCTTTTCTCTATTTCCTATTGGTTGGACTATCA
GATGTGTGAATGAGAGATGCCCCATAGACTCCTCCTAAAATACACAGAAA
GGTCTGCAACCCAGTGATCCATATCAAACTTGGAAGGAATCATATGAACG
GTGATTCTAATTCCTGTTTCTGAGCCCGAACCCTGAAAAATTTTGCTGAC
CTGTTTTTCATTTTCTCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_c19.b1 MSMg01no292_c19.b1 CHROMAT_FILE:
MSMg01no292_c19.b1 PHD_FILE: MSMg01no292_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:10 2005
         (323 letters)



>mm_chr1_124688455_124689177
          Length = 723

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagggtcatattcgccaagccccttcacccactgagccttatttctggcctgatg 64
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattcagggtcacatttgccaagccccttcacccactgagccttatttctggcctgatg 464

                                                                       
Query: 65  gagatattttacactcaaccttcatgaaaggtattttggtaatatataaaattgaaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gagatattttacactcaaccttcatgaaaggtattttggtaatatataaaattgaaaata 404

                                                                       
Query: 125 gctatttgctttaactcgtgtgttattataactatgttttaagtatgcacatatctacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gctatttgctttaactcgtgtgttattataactatgttttaagtatgcacatatctacac 344

                                                                       
Query: 185 aatatctacacaatagaagacatttatctgtgaaagaaaataaagaattcaagttatgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aatatctacacaatagaagacatttatctgtgaaagaaaataaagaattcaagttatgta 284

                                                                       
Query: 245 tatagtgatgaagtggaacatttgaaagcattgaatgtgccagtagaaatggaataatgt 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 283 tatagtgatgaagtggaacatttgaaagcattgaatgtgtcagtagaaatggaataatgt 224

                              
Query: 305 gaacagcttatgacatatg 323
           ||||||||||| |||||||
Sbjct: 223 gaacagcttataacatatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no292_c19.g1 MSMg01no292_c19.g1 CHROMAT_FILE:
MSMg01no292_c19.g1 PHD_FILE: MSMg01no292_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:10 2005
         (298 letters)



>mm_chr1_124510129_124510826
          Length = 698

 Score =  522 bits (270), Expect = e-153
 Identities = 288/294 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcctttaaaggcacaggagtgaggtctattgctgtgatttggttcacaggaaatatac 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctcctttaaaggcacaggagtgaggtctattgctgtgatttggatcacaggaaatatac 260

                                                                       
Query: 61  aaatacaaatctgcccccacaaaacaaggagactagagagcacagaacagacggtgaggg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatataaatctgcccccacaaaacaaggagactagagagcacagaacagacggtgaggg 320

                                                                       
Query: 121 ggaaatggcaggacggggatcctttttgtgttttattcattttccactgttctttctaag 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ggaaatggcaggacggggatcctttttgtgttttattcatcttccactgttctttctaag 380

                                                                       
Query: 181 gtggtcgatgctttttaacatggacacagtcttataaagactcaccactgtagtaatgcc 240
           |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gtggttaatgctttttaacatggacacagtcttataaaggctcaccactgtagtaatgcc 440

                                                                 
Query: 241 aactcagtcacactctcccaagacttctaaactgttcatcatatccagtgtttt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactcagtcacactctcccaagacttctaaactgttcatcatatccagtgtttt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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