BAC Information

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BAC

Clone NameMSMg01-292I20
Chromosome1 (Build37)
Map Location 137,163,499 - 137,384,546
singlet/doubletdoublet
Overlap geneRnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1
Upstream geneMyog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3
Downstream geneEG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292I20.T7 (MSMg01no292_i20.b1)MSMg01-292I20.TJ (MSMg01no292_i20.g1)
ACCAG421243AG421244
length782798
length of high quality
(start - end)		276 (45 - 320)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no292_i20.b1 PHD_FILE: MSMg01no292_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:39 2005CHROMAT_FILE: MSMg01no292_i20.g1 PHD_FILE: MSMg01no292_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,163,499 - 137,163,770)(137,384,257 - 137,384,546)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAAAGTCTTCCGCCAAGATACTTTGGAATTTAAACTCATCTACA
TAGGCCTGTGAGGAGGGACACGGCCGTTGTTGTCTCTGGCCGCCCTGGGG
AACAGACCCCCCTCCCCCCCTCATCTCTCAGTCCCTCTCTGACCCCTTAC
CTCTTGTGGTTGGGCCCCCTACCCCTACCCTAGCACTCTGGCCCAGCTGC
TTTACCTGTTCCTTGTCCTTCTCCCCACATGGAGAGTTGACTGTACCTTG
AGAAACTTGTCAAACTGATCTTTTTTTTTCACCAGGTGGGCCAGGTATGA
GACAAAGCATTTTACNCTTTCTCCCCGGGGCAANNCCCGNAGGTGTCATC
GGAGGAAANANGAGACCCCCCCTTTTNAAAAAAAAAAAAGANCNGCTGGT
GTGGGGGGCTTCTGCCTCCCCATTACCCATTGACTGTTGTATTTGACCCT
ATTCCCCCTTTTTGATCATATCCTCACTTTCCATTTCTCTTATATCCCTT
CCCTTGCCTCTTTCTTCTTTTATTCCCCACTTTTGTTTCTCCTCCCTTTT
CAGTTCCTTTTTTTGTTTCCTTTTCCCCCATCTTGCTCTACAATCCCCTT
TTTCCTTTTCCTTTTTCTCTCCTCTTGTTTTCCTTTTCTTTTTTCCCCCC
CTCTTTTCCCTTTCTTTTCCGTTGTCCCATCCGCTTCTATATTTTCGCAT
TCCCTCTCTCTTCTTTACCTTTTTCTTATTTT

CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGCCTGAACTACAGAGTA
AGGTCTTATTCCAATAAATAAATAAATGCCAGGGGTAGAAAAAGTTCTGG
GTTGAAAAGTAGCCTGAATCGGGGAAGTAGTCCTGTCCACCGTAAGACAA
TGGGGTAGTAATGCGTCCATGAAACTGGTAATATCCATCCTTAATGCTTG
CTGGAGTCTGCTTAGACTGCCATGATAAGATAATACAGACCAAGAGGCTT
AAACAACATTTCCTTTTTTCAGAGTTCTGGAAGTTCCAGGTCAGGGTGCG
ATTGGAGTTGGTTTCTTTTTTTTTTACTCCCCCCCACCCGTAAACTGCTG
CCTCCCCACTGTGACTACACCCCGCAAGAAGGATCAGGACTTTCCTTCTT
CGAGAGGATATTCGCCCTTATGGTATTAGAGTCCTATCCTGTGTCCTCAT
CTCCCATCTTTTATTATTACCTCCCTACAAGCAATTGTATTGTGAATTTT
TTCTCTTGTTCTTTTTTCCCTTTGTTTCTTTTTTTTTTCTTTTTCGCCTC
TTATTTTTATTTTTTTTTTTTCTCCCACCCTTTTTTTTCTATTATTTTTC
CTTTTTTTTTTTCTTCCACCCTCTTTTTTGTCCTATTCCCTATTTTTCTC
GACCCACTTTTTTTGTTATACCTCTCTTTTTCTTCAGTTTCCTACTTCCT
TTCTTCCTAAATATTCCTTTTTCTTCTTCTTCGCCCCCCTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_i20.b1 MSMg01no292_i20.b1 CHROMAT_FILE:
MSMg01no292_i20.b1 PHD_FILE: MSMg01no292_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:39 2005
         (276 letters)



>mm_chr1_137163295_137163970
          Length = 676

 Score =  503 bits (260), Expect = e-147
 Identities = 269/272 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaaagtcttccgccaagatactttggaatttaaactcatctacataggcctg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaagtcttcagccaagatactttggaatttaaactcatctacataggcctg 264

                                                                       
Query: 65  tgaggagggacacggccgttgttgtctctggccgccctggggaacagacccccctccccc 124
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaggagggacacggttgttgttgtctctggccgccctggggaacagacccccctccccc 324

                                                                       
Query: 125 cctcatctctcagtccctctctgaccccttacctcttgtggttgggccccctacccctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctcatctctcagtccctctctgaccccttacctcttgtggttgggccccctacccctac 384

                                                                       
Query: 185 cctagcactctggcccagctgctttacctgttccttgtccttctccccacatggagagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctagcactctggcccagctgctttacctgttccttgtccttctccccacatggagagtt 444

                                           
Query: 245 gactgtaccttgagaaacttgtcaaactgatc 276
           ||||||||||||||||||||||||||||||||
Sbjct: 445 gactgtaccttgagaaacttgtcaaactgatc 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no292_i20.g1 MSMg01no292_i20.g1 CHROMAT_FILE:
MSMg01no292_i20.g1 PHD_FILE: MSMg01no292_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:39 2005
         (291 letters)



>mm_chr1_137384169_137384859
          Length = 691

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaccagcctgaactacagagtaaggtcttattccaataaataaataaatgccaggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagaccagcctgaactacagagtaaggtcttattccaataaataaataaatgccaggggt 319

                                                                       
Query: 61  agaaaaagttctgggttgaaaagtagcctgaatcggggaagtagtcctgtccaccgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agaaaaagttctgggttgaaaagtagcctgaatcggggaagtagtcctgtccaccgtaag 259

                                                                       
Query: 121 acaatggggtagtaatgcgtccatgaaactggtaatatccatccttaatgcttgctggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acaatggggtagtaatgcgtccatgaaactggtaatatccatccttaatgcttgctggag 199

                                                                       
Query: 181 tctgcttagactgccatgataagataatacagaccaagaggcttaaacaacatttccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tctgcttagactgccatgataagataatacagaccaagaggcttaaacaacatttccttt 139

                                                             
Query: 241 tttcagagttctggaagttccaggtcagggtgcgattggagttggtttct 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tttcagagttctggaagttccaggtcagggtgcgattggagttggtttct 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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