BAC Information

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BAC

Clone NameMSMg01-292J06
Chromosome1 (Build37)
Map Location 140,466,248 - 140,682,052
singlet/doubletdoublet
Overlap geneNek7, LOC545363, LOC667745
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
Downstream geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292J06.T7 (MSMg01no292_j06.b1)MSMg01-292J06.TJ (MSMg01no292_j06.g1)
ACCAG421263AG421264
length771807
length of high quality
(start - end)
293 (72 - 364)236 (129 - 364)
definitionCHROMAT_FILE: MSMg01no292_j06.b1 PHD_FILE: MSMg01no292_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:41 2005CHROMAT_FILE: MSMg01no292_j06.g1 PHD_FILE: MSMg01no292_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,466,248 - 140,466,536)(140,681,818 - 140,682,052)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGATCCGCGGAA
TTCATGTTCCATACCCATGGACACTTATCACTCATCAGGGGAGGGAAAAA
TGTCTAAAGGCCGTAGGTCTGCCCGTGAGCTGACTTTAAATATGACCTTA
TCCAAATTATTAAATAAGCTATCATACATTACAAGACAATATAGTTTATT
CAGTGAAAATGTAACCATCTTACTGCAATATTACTAAAATAGCATTAGCA
TCATTCCTTAAATAAAGTATTACTTTGTTCCCATAGTTAATCAATATATC
AAATGTAAAGAAACTCAAGCCCTGAGATCTTTACTAGCAAACTACATTTC
ACAGGAGCAATCTTTTTCTACACTCACTCCGGCAGAAGTCTTAAGCAACT
TTCCATATACCCCCCCCCCCACGTCATGATATACAAAGATTGTACTGTAC
ACTGACAGAAATAAAATGAACCAATATATGTTTCCAACTTGGTCAACAGA
ATTCTTGGCCAATTGCAAAATACAGATTTAAAGCATAGATTATAGAATTT
TTTAAAAGAAGAAATTTTGAAAATATGTCTTTTAAAACATTTAATAAAAT
TCACTTGTAACAATGATCTCTGCCAAAACACACTGCAACTTTGCCTTTTT
TGACAGACTTTTTAACAGTAATAATGATCAGCTAAATGGACATATTTCCT
TCATTACTTATCAGTGAAGAAAAATATAAAAATTAATGAATCAGAAGGCT
GTTCTAAATCACCATCCCTTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAAGAGTTAATAACGAAACCACATG
CCTGGAAGCAAATTCAAGAGGTCCCCGTGCAGATGATTTTAGTCTCCCAC
CAACACAGACCCTCTCGGAGGAAATGCTAAGGTGAGCTGGCTGTTTGGAA
GAACTCTCCGAGGTTACGGATCTTGTAAAACACTTTCATGGAGTTAAAGG
CCTTGTTTGCACTTTGTTCTTTTTCTGGTGCGAGTAAGAAAGAGTCAGTA
TGAAAGAGCCATGGTGGTGGCACATGCTTTTATTCCCAACACTCAGGAAG
GCAGAGGCAGGTATATTTTTTTGCCCGCACGCCCCCCTGGTGTACAAAGT
GAGTTCCAGGACACNNNACTTTCTTCCCGAGAAAAGAAAAGAAGAGAAGA
GAACAGAAGAGAAGAGAAGAGAACAGAACAGAAGAGAACAGAAGAGAAGA
GAAGAGAAGAGAAGAGAAGACAAGAGCACAGGACAATAGGCCAGACATAC
CCAACCATTACCCACCCTCCCAAATTATCTTTTCTTACTTCCCCATATCA
TTTTCTCCTACTTTTTTCTTCCTTACTCTCCCCCCCTCTCCTCTATTTCC
AGTACAATTTCTTAACACTTTCCCTCCCCATTCCCCTTCCTCTTTCCCTC
CCCTCCCCCCCCTTTCACCTTTCTTCCCTCTCCTCATCCCTCTACCCTGT
CTCTTTCCCTCCTTTCCGTCCCCCCTCCCCCTTCCTCTTTTTCTTCGTCC
TCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_j06.b1 MSMg01no292_j06.b1 CHROMAT_FILE:
MSMg01no292_j06.b1 PHD_FILE: MSMg01no292_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:41 2005
         (293 letters)



>mm_chr1_140466048_140466740
          Length = 693

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttatcactcatcaggggagggaaaaatgtctaaaggccgtaggtctgcccgtgagct 60
           |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cactcatcactcatcaggggagggaaaaatgtctaaaggccgtaggtctgccagtgagct 260

                                                                       
Query: 61  gactttaaatatgaccttatccaaattattaaataagctatcatacattacaagacaata 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gactttaaatatgaccttatgcaaattattaaataagctatcatacattacaaggcaata 320

                                                                       
Query: 121 tagtttattcagtgaaaatgtaaccatcttactgcaatattactaaaatagcattagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtttattcagtgaaaatgtaaccatcttactgcaatattactaaaatagcattagcat 380

                                                                       
Query: 181 cattccttaaataaagtattactttgttcccatagttaatcaatatatcaaatgtaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattccttaaataaagtattactttgttcccatagttaatcaatatatcaaatgtaaaga 440

                                                            
Query: 241 aactcaagccctgagatctttactagcaaactacatttcacaggagcaa 289
           |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aactcaagccctcagatctttactagcaaactacatctcacaggagcaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no292_j06.g1 MSMg01no292_j06.g1 CHROMAT_FILE:
MSMg01no292_j06.g1 PHD_FILE: MSMg01no292_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:41 2005
         (236 letters)



>mm_chr1_140681668_140682303
          Length = 636

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagatgattttagtctcccaccaacacagaccctctcggaggaaatgctaaggtgagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagatgattttagtctcccaccaacacagaccctctcggaggaaatgctaaggtgagct 326

                                                                       
Query: 61  ggctgtttggaagaactctccgaggttacggatcttgtaaaacactttcatggagttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 ggctgtttggaagaactctccgaggttacggatcttgtaaaacactttcatggagttgaa 266

                                                                       
Query: 121 ggccttgtttgcactttgttctttttctggtgcgagtaagaaagagtcagtatgaaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggccttgtttgcactttgttctttttctggtgcgagtaagaaagagtcagtatgaaagag 206

                                                                  
Query: 181 ccatggtggtggcacatgcttttattcccaacactcaggaaggcagaggcaggta 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ccatggtggtggcacatgcttttattcccaacactcaggaaggcagaggcaggta 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)