BAC Information

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BAC

Clone NameMSMg01-292K20
Chromosome1 (Build37)
Map Location 196,173,374 - 196,173,747
singlet/doubletsinglet
Overlap genenone
Upstream geneCamk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292K20.T7 (MSMg01no292_k20.b1)MSMg01-292K20.TJ (MSMg01no292_k20.g1)
ACCAG421333AG421334
length802771
length of high quality
(start - end)		325 (46 - 370)513 (77 - 589)
definitionCHROMAT_FILE: MSMg01no292_k20.b1 PHD_FILE: MSMg01no292_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:48 2005CHROMAT_FILE: MSMg01no292_k20.g1 PHD_FILE: MSMg01no292_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTGTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAATTCTTTATATACATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATG
AGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGATTTTCCCCACTT
TCTCCTCTATAAGTTTTTTTATTTTCCCCCCCCCCCCCCATCTTAACTGG
TAAAGGTCCTGACCTTCCCCCCTTGAGTTAAAAAAAAACATATTACGTGG
GTGGGCTAACATTTCCATGACCTCCCCAAAGTATTTCCATCTGGTGACAA
ATGTGTAGTTTCCACATTAAATCCTAAACCAACTACCAGGTTGTTTGAAT
GTAATGCTTTCACTAAAGGGTTTGCTACCACTATTTATTAACCCGTCGGA
AATATCATTTGTTTACTTTAGTTTCTCCCGTTTTTGCTCTTGTCCCCCAT
CTTTTCACTTCCCTGTTTACTCCCGCACCTTTTGTGCCTCCCGCATTATG
TTCCTCCTCCTTTGTTGCCTGACCTTCCCCCTTTTATTACGCTACTCGAT
TTCGTTTTCCTCTTTGTCTGCTTTCCTCTCTTCTTCCTTTTCTTTTTTTT
TG

GCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACAGTTAAAATGACTGTGTTATG
ATCACTAAGAAATGTTAATAAGAGAGCTTGCAGCTGGGCTTGAGATAGTC
AAGCTGATAAGGACAACTCTCTGAGAAAGACCTCAAGGCCTGTCTTGACA
CATTCTGGTTAGTTGCATGAGCTCTCCACCCATTGAGGAACAAAACAATG
TTTCCCTTTTACATATTCTTCCATCTTGCACGTGCCCGACTCTCCAGCAA
GAACGACGCTGCAACAGGATCCCTCTGCACACGTTTATTGGGAGAGCATG
GACTGCGTAGGCGAAAGACCCCAAGCCCAGAACTGGCGCTGCTTATATAG
GCCTAGGAGAGGCGTGTCTCACACCCGGATTGGTTATGCATGGATTATGC
ATGTCTACATCTGATTGGTTAACTTGTCTCTCATCTGATTGGTTAATTCT
CAAAACCTCATCTTGGCAAAAAAACTTTACTGCCTATGTATGCGTGGTGG
CCAGTGGTAGCCAGCGGTAGCCAGCGCCACCCTGCAACGGCACATGTGGC
TTCCCACACTTCCACTTAATTACAATACCAAATTGTGGTTCAGGATGGCT
TCCAAATGGCCTCCACTTATTCTTGTATAGAGGCCCACTAACTGTGCCAT
ACTCCGGAACCTCACATCACGATCTGCCCATGACAACTCGAACCTCTTCC
TTGGTTCCCTCATTACTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_k20.g1 MSMg01no292_k20.g1 CHROMAT_FILE:
MSMg01no292_k20.g1 PHD_FILE: MSMg01no292_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:48 2005
         (513 letters)



>mm_chr1_196173351_196174263
          Length = 913

 Score =  716 bits (370), Expect = 0.0
 Identities = 373/374 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagttaaaatgactgtgttatgatcactaagaaatgttaataagagagcttgcagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tacagttaaaatgactgtgttatgatcactaagaaatgttaataagagagcttgcagctg 338

                                                                       
Query: 61  ggcttgagatagtcaagctgataaggacaactctctgagaaagacctcaaggcctgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ggcttgagatagtcaagctgataaggacaactctctgagaaagacctcaaggcctgtctt 278

                                                                       
Query: 121 gacacattctggttagttgcatgagctctccacccattgaggaacaaaacaatgtttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gacacattctggttagttgcatgagctctccacccattgaggaacaaaacaatgtttccc 218

                                                                       
Query: 181 ttttacatattcttccatcttgcacgtgcccgactctccagcaagaacgacgctgcaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttttacatattcttccatcttgcacgtgcccgactctccagcaagaacgacgctgcaaca 158

                                                                       
Query: 241 ggatccctctgcacacgtttattgggagagcatggactgcgtaggcgaaagaccccaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ggatccctctgcacacgtttattgggagagcatggactgcgtaggcgaaagaccccaagc 98

                                                                       
Query: 301 ccagaactggcgctgcttatataggcctaggagaggcgtgtctcacacccggattggtta 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  ccagaactggtgctgcttatataggcctaggagaggcgtgtctcacacccggattggtta 38

                         
Query: 361 tgcatggattatgc 374
           ||||||||||||||
Sbjct: 37  tgcatggattatgc 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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