BAC Information

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BAC

Clone NameMSMg01-292N08
Chromosome1 (Build37)
Map Location 44,129,057 - 44,146,660
singlet/doubletdoublet
Overlap geneEG666713, 1700029F09Rik
Upstream geneTgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik
Downstream geneKdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292N08.T7 (MSMg01no292_n08.b1)MSMg01-292N08.TJ (MSMg01no292_n08.g1)
ACCAG421446AG421447
length769773
length of high quality
(start - end)		369 (46 - 414)338 (77 - 414)
definitionCHROMAT_FILE: MSMg01no292_n08.b1 PHD_FILE: MSMg01no292_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:01 2005CHROMAT_FILE: MSMg01no292_n08.g1 PHD_FILE: MSMg01no292_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,146,298 - 44,146,660)(44,129,057 - 44,129,393)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTGGAAATACCAAGCACAGCTCATGAGGCCAGAGAGAGATGGG
TTCTCATACTTTTCCCAGTCATGCCTTAGCTTGCCTAGCTTGTAAAGTTT
TCAGGCAATGGAGAATATGTATCTAAAGGAAGCTCCAGTAAGGGAGCTGA
GGGAAACTAGGCCTTCACTGGCCTAGTTTGTGTCATTTTATAATTTTCGA
ATTCGTCTCCACAAGAAAAACCTCCTCCTTTTTTCCTCTTTTATCGATTT
TAAGGTTTAGTCATCCAGTTTATATTCATTCAAGGCATCAGCCATCTCTT
TGTCATGATTAATATCCTCCTTATCGCCCTTAAGTATTTTAGTTTTAAAT
ATTTATTATAACCCCCCCCCCCCCTGTCCAAGTGACTCAAAATTGAAGGA
TTCTTTCCCCTTCTTTATATGCTTTTTCAATATTCTTTTAGACTCTCCCA
TACTTCATATAAAGTTCCTTCTTCTGGAAACCAGGGATTATGATCATAAA
CTACTTGCAAGCAGCCTAGTACTTGTGATTTTGATACTTAGGCTCCTCCT
TTCTTTAAGAAATTAAGCACAGACTCTTGGACATAAGGCAAAGCTTTCCC
TGCGTTCTGCCCTGCTATATTCACCTCCTTCCTGTGAGGGTTTCCCCCAA
ATCTTACTTCATAATTGAATCTTGGTCCCCTTGTTTCCTTTACCACTCAC
TCCTAAAGTCGGTGCCACG

TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAATTTAGGAGCTCTGCTTG
TGTAGATGTGTTGTTCTTTATATTTGCAACATGAAATGAATCCATTCTTG
AGTCAGCTGGCTTCTCAATTGTGTCTGTGAAAGATTCTGCTTGAAACATT
TCTTCCTCCATTTTAATCTCCTTCACTGGCTGTGCACTGCATCTGAAGCT
CCTCTTACTGTGAGCCCCTCTCGCCCGCAGTGCCTGCTTCACCACTTTCA
CACCATGGCACGATTGAACTTCTAGAGTATCTTCAGCTCCTTTTTCTTTA
ATAAGGGAATTGAAATTATTTCCTTTCTTCCCATCTTGGGGTTTTGAGTC
TGTTATTTTGATACCCACCCCCCCATAGAAAAAACAAGACCTCTGAGGGT
CAACATTCATAGGCCTGGCTGCCAATGTTGCACAATACAGCATTTGTTTA
ATAATGTTTCTGAAACTGCCTCCTACTCTTCTCCTATGGATCAGAGGGTC
ATATGCCCTAATACCAAATCTCTGGCAATATGCATATTTCTTCACTTTTA
TAATTTTCCTGCTTGCACCTCCAGCACATTTTTTGACCCAGATTGTTCTT
CTTTTTGTACCCCATATCTTTTTGTGTCCCCTGACCCTCTTCCTCCACTT
CTACCCTCCTTCACCTCTCCCGTTACACTACTTCTATACGTCCCCTTTAC
CTTCCTTTTCATTCTTCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_n08.b1 MSMg01no292_n08.b1 CHROMAT_FILE:
MSMg01no292_n08.b1 PHD_FILE: MSMg01no292_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:01 2005
         (369 letters)



>mm_chr1_44146094_44146862
          Length = 769

 Score =  679 bits (351), Expect = 0.0
 Identities = 360/363 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactggaaataccaagcacagctcatgaggccagagagagatgggttctcatac 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 567 gaattccactggaaataccaagcacagctcatgaggccagagaaagatgggttctcatac 508

                                                                       
Query: 65  ttttcccagtcatgccttagcttgcctagcttgtaaagttttcaggcaatggagaatatg 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttttccagtcatgccttagcttgcctagcttgtaaagttttcaggcaatggagaatatg 448

                                                                       
Query: 125 tatctaaaggaagctccagtaagggagctgagggaaactaggccttcactggcctagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tatctaaaggaagctccagtaagggagctgagggaaactaggccttcactggcctagttt 388

                                                                       
Query: 185 gtgtcattttataattttcgaattcgtctccacaagaaaaacctcctccttttttcctct 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 387 gtgtcattttataattttcgaattcgtctccacaagaaaaacctcctctttttttcctct 328

                                                                       
Query: 245 tttatcgattttaaggtttagtcatccagtttatattcattcaaggcatcagccatctct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttatcgattttaaggtttagtcatccagtttatattcattcaaggcatcagccatctct 268

                                                                       
Query: 305 ttgtcatgattaatatcctccttatcgcccttaagtattttagttttaaatatttattat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgtcatgattaatatcctccttatcgcccttaagtattttagttttaaatatttattat 208

              
Query: 365 aac 367
           |||
Sbjct: 207 aac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no292_n08.g1 MSMg01no292_n08.g1 CHROMAT_FILE:
MSMg01no292_n08.g1 PHD_FILE: MSMg01no292_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:01 2005
         (338 letters)



>mm_chr1_44128857_44129594
          Length = 738

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagaatttaggagctctgcttgtgtagatgtgttgttctttatatttgcaacatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagaatttaggagctctgcttgtgtagatgtgttgttctttatatttgcaacatgaaa 260

                                                                       
Query: 61  tgaatccattcttgagtcagctggcttctcaattgtgtctgtgaaagattctgcttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatccattcttgagtcagctggcttctcaattgtgtctgtgaaagattctgcttgaaa 320

                                                                       
Query: 121 catttcttcctccattttaatctccttcactggctgtgcactgcatctgaagctcctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttcttcctccattttaatctccttcactggctgtgcactgcatctgaagctcctctt 380

                                                                       
Query: 181 actgtgagcccctctcgcccgcagtgcctgcttcaccactttcacaccatggcacgattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtgagcccctctcgcccgcagtgcctgcttcaccactttcacaccatggcacgattg 440

                                                                       
Query: 241 aacttctagagtatcttcagctcctttttctttaataagggaattgaaattatttccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttctagagtatcttcagctcctttttctttaataagggaattgaaattatttccttt 500

                                                
Query: 301 cttcccatcttggggttttgagtctgttattttgata 337
           |||  ||||||||||||||| ||||||||||||||||
Sbjct: 501 cttttcatcttggggttttgggtctgttattttgata 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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