Query= MSMg01no292_p21.b1 MSMg01no292_p21.b1 CHROMAT_FILE:
MSMg01no292_p21.b1 PHD_FILE: MSMg01no292_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:14 2005
(370 letters)
>mm_chr1_52263826_52264595
Length = 770
Score = 652 bits (337), Expect = 0.0
Identities = 363/381 (95%), Gaps = 15/381 (3%)
Strand = Plus / Minus
Query: 5 gaattcttgttttactgtgtgattatcagcataattctgggtgtgaacaactggtttgat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattcttgttttactgtgtgattatcagcataattctgggtgtgaacaactggtttgat 482
Query: 65 aagtgccttactccaaacaattctccctacagaaaagtatgtatgcatccaaggaagtgg 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgtgccttactccaaacaattctccctacagaaaagtatgtatgcatccaaggaagtgg 422
Query: 125 atcaaagtatttgaaacaatgctgtcacgattatgttttacagataaaccacataatcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcaaagtatttgaaacaatgctgtcacgattatgttttacagataaaccacataatcct 362
Query: 185 atggtaaatgctggagcaattgttgtgacttctctaataaaggtaaaatgttgacatttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggtaaatgctggagcaattgttgtgacttctctaataaaggtaaaatgttgacatttc 302
Query: 245 tttttaacctagtaagtttttagtaaataagtaataaacatgtattttttatgtgggact 304
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 301 tttttaacctagtaattttttagtaaataagtaataagcatgtattttttatgtgggact 242
Query: 305 atgatgataagttttctcttggaattgagaaaata---------------gttaggaatt 349
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 241 atgatgataagttttctcttggaattgagaaaatagtcttgttatattgggttaggaatt 182
Query: 350 ttatttatcttccctccccca 370
|||||||||||||||||||||
Sbjct: 181 ttatttatcttccctccccca 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no292_p21.g1 MSMg01no292_p21.g1 CHROMAT_FILE:
MSMg01no292_p21.g1 PHD_FILE: MSMg01no292_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:14 2005
(281 letters)
>mm_chr1_52085519_52086199
Length = 681
Score = 484 bits (250), Expect = e-141
Identities = 274/282 (97%), Gaps = 2/282 (0%)
Strand = Plus / Plus
Query: 1 tctgtgcctttttcctgtctgcgacacagttcctctccctccactatcccccatgtccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgcctttttcctgtctgcgacacagttcctctccctccactatcccccatgtccca 260
Query: 61 gcgtgtggcttgtcctgtgtgccagtaaaatctacaatggtttctgcccgctctgctttc 120
| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gtgtatggcttgtcctgtgtgccagtaaaatctacaatggtttctacccgctctgctttc 320
Query: 121 tcatagcccttagtgttcaaacaattcatcctgacacttgatcattagatctaa-agtgt 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | |
Sbjct: 321 tcatagcccttagtgttcaaacaattcatcctgacacttaatcattagatctaccact-t 379
Query: 180 tagatacatgacaatcggctgataataaagagttacattttggggaatccatcacttcct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagatacatgacaatcggctgataataaagagttacattttggggaatccatcacttcct 439
Query: 240 caaggcaactcaagcgtctccttcttctgagagacaaagagt 281
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caaggcaactcaagcgtctccttcttctgagagacaaagagt 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
