BAC Information

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BAC

Clone NameMSMg01-293B04
Chromosome1 (Build37)
Map Location 155,422,212 - 155,422,509
singlet/doubletsinglet
Overlap genenone
Upstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl
Downstream geneLOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293B04.T7 (MSMg01no293_b04.b1)MSMg01-293B04.TJ (MSMg01no293_b04.g1)
ACCAG421619AG421620
length748750
length of high quality
(start - end)
660 (46 - 705)298 (77 - 374)
definitionCHROMAT_FILE: MSMg01no293_b04.b1 PHD_FILE: MSMg01no293_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:21 2005CHROMAT_FILE: MSMg01no293_b04.g1 PHD_FILE: MSMg01no293_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTAATCCTAACAGGAGGCAAAGACAGGTGGGATTCTAGAAGTT
TGAGACCGGTTTGGTCTATATAGTAAGTTCCAGGCCCCCCAGGGCTACAT
AGTGAGACCCTGTCTCAAATAAGTAAATCTAAAAATTAAAACTAATAAAC
AAAACCCCGAATTCTAGAAGCTGGGTACAGTGATAAACATGGGTGGTCTG
AACATTGGAGAGGTAGAGGCAGGAGGATCCGAAGTCTTAAGGTTCATCAG
CTGTGTAGGAGGCTGAAGGCCAGCCTCATCTAATGACACCCTGTCTCAAA
AAGGAAACACAGTCCAGACAGTTTACCTACCCACTTGTGTGTGTGTTTGG
CCGACTGTCTTAGTGTCCTGTCTATTGTGCTGATGAAACACTGAAAGCAG
AAGCGGCTTAGAGGAGGAAGGGTTTATTTGACTGACACATCTTGTCATGG
AAGTGAAGACTGGACAGAAACCTGCAGACAGACACTGTGGAGGAGCGCTG
CTTGTGGGCTCCTGAAGGCTCCGAGTAACTAGCTTTCTTATGTAGCCCAC
AGTGAGCTAGGCCCTCACAGCAGTTAACAATTGAGCAGATTCCCCACAAA
CTGCCCACAGGCCTGTCTGATCTGGGCAATCAATCCTGATATTCCTTCCT
CAAGAGACTTTAGGCTGTGTCAAGTTGATAATTAAGTAACCAAGAGAG
TCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTCATTGGCAAAGATATCTC
AGAGATACTTGAATCTTAAAAATCCATGGACCTTGAAAAAATTTAATTTC
TGCTTAACTCTGGGAACGTGAAAGTTGTTGCAAATGCAAGCAAATTGTGA
GCCAAGCAAATGTTCCATCTTGCTTCACTGCATTTGTGTTTTCTGATAAT
ATTCACCAGCAATTTCTAAGATGCCTCTTAGCTTACCAGTAAGGCTAGTT
GGGTTGTTTGTTTGTTTTTTTCATAATTAATGGTGATATAAATTTATGAG
GCTTCTATTATTTTTTTTTTTACTATTTTCACCCCTGCAAGACTAGAAGA
CTGCCAGCTTTAAAAGCATCCCACGCTGATTTCAGCTTGAAATTGCATGA
GGGAATTGCTTAGCAGTGGTGAGCCACTGTCCCCCGGGCCTGATAAAATG
AAACCATCCTGGCTACATCATTCGCATTTATTCAGTGCTTAGACAGGTGG
TCTCCAGATAGTTTACACATACACTCAGCCAACAGGAAAATGTTAAGCAT
GTTTTCTGTAAATTACCCAGTGTAGACCAAGAGTCCCAAATGTATATAAG
AGCTGATTATATCCAGCTTATGCATCACTATATCTTGAAACGCTCCTGGT
CCATCGACAAATTGCCCTAACTCCACACTCAATCATGGTTTCTAAACTAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_b04.g1 MSMg01no293_b04.g1 CHROMAT_FILE:
MSMg01no293_b04.g1 PHD_FILE: MSMg01no293_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:21 2005
         (298 letters)



>mm_chr1_155422012_155422709
          Length = 698

 Score =  576 bits (298), Expect = e-169
 Identities = 298/298 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttcattggcaaagatatctcagagatacttgaatcttaaaaatccatggaccttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcttttcattggcaaagatatctcagagatacttgaatcttaaaaatccatggaccttga 439

                                                                       
Query: 61  aaaaatttaatttctgcttaactctgggaacgtgaaagttgttgcaaatgcaagcaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaaaatttaatttctgcttaactctgggaacgtgaaagttgttgcaaatgcaagcaaatt 379

                                                                       
Query: 121 gtgagccaagcaaatgttccatcttgcttcactgcatttgtgttttctgataatattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtgagccaagcaaatgttccatcttgcttcactgcatttgtgttttctgataatattcac 319

                                                                       
Query: 181 cagcaatttctaagatgcctcttagcttaccagtaaggctagttgggttgtttgtttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagcaatttctaagatgcctcttagcttaccagtaaggctagttgggttgtttgtttgtt 259

                                                                     
Query: 241 tttttcataattaatggtgatataaatttatgaggcttctattatttttttttttact 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttttcataattaatggtgatataaatttatgaggcttctattatttttttttttact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)