Query= MSMg01no293_d17.b1 MSMg01no293_d17.b1 CHROMAT_FILE:
MSMg01no293_d17.b1 PHD_FILE: MSMg01no293_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:35 2005
(705 letters)
>mm_chr1_22123530_22124634
Length = 1105
Score = 743 bits (384), Expect = 0.0
Identities = 390/392 (99%)
Strand = Plus / Minus
Query: 312 agataaattaataataaacacatggcttatatacgcaataacattttattcagtgtaaag 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 agataaattaataataaacacatggcttatatacgcaataacattttattcagtgtaaag 1046
Query: 372 gaaaatgaaatcatgaaatgtgcaggaaaatagatgaaacttgaaaatactttgttttaa 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 gaaaatgaaatcatgaaatgtgcaggaaaatagatgaaacttgaaaatactttgttttaa 986
Query: 432 atgaggtaaaccaggttcagacagatgaacaccacgtttactttctcacatgcagatctg 491
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 985 atgaggtaaaccaggttcagacagatgaacaccacgtttaccttctcacatgcagatctg 926
Query: 492 agtttgtaattttagtatggtggttattaattatgtggaactgagtgtgatacagcacag 551
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 actttgtaattttagtatggtggttattaattatgtggaactgagtgtgatacagcacag 866
Query: 552 gaaattaaaaaggggtccatgagaggtgaaagaggctttatggggttggatatgagaaga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaaattaaaaaggggtccatgagaggtgaaagaggctttatggggttggatatgagaaga 806
Query: 612 gtaacggaaaaggatgtgatgtgaaaggggaaagggaatacaggaggcagcaagtaccac 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtaacggaaaaggatgtgatgtgaaaggggaaagggaatacaggaggcagcaagtaccac 746
Query: 672 aaacaggagaaggaaggtgatggagaggagca 703
||||||||||||||||||||||||||||||||
Sbjct: 745 aaacaggagaaggaaggtgatggagaggagca 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no293_d17.g1 MSMg01no293_d17.g1 CHROMAT_FILE:
MSMg01no293_d17.g1 PHD_FILE: MSMg01no293_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:35 2005
(290 letters)
>mm_chr1_21931309_21931998
Length = 690
Score = 518 bits (268), Expect = e-151
Identities = 289/306 (94%), Gaps = 16/306 (5%)
Strand = Plus / Plus
Query: 1 atgaggctaaactgaatccttttttttttttt----------------ccagattgaacg 44
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 185 atgaggctaaactgaatcctttttttttttttttttttttttttttttccagattgaacg 244
Query: 45 ttctcctctggagcagcattatctctgtcttcagggttaacctcacataggaacgcagta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttctcctctggagcagcattatctctgtcttcagggttaacctcacataggaacgcagta 304
Query: 105 catttgacattagcaaatgtggttgtcaccttcagggtccctggcagtggccaggctaaa 164
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 catttgacattagcaaatgtggttgtcaccttcagggtccctggcagtggccaggctaag 364
Query: 165 aggagaggtggagagcgatgatgtatcattaagtctgaaagatccaggaaagctcaagtt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggagaggtggagagcgatgatgtatcattaagtctgaaagatccaggaaagctcaagtt 424
Query: 225 ggataagataagggatgaagacaaaggatgaattgtgtatactggaagacttctctactt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggataagataagggatgaagacaaaggatgaattgtgtatactggaagacttctctactt 484
Query: 285 taggtg 290
||||||
Sbjct: 485 taggtg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
