TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTATATGATTTCTTTCTCCTGGTACTTAAAAGTGCAACATTAAG
AATGTGGCAATGTGGATATGTACAGCTATTATAGTTTTAATTACTTAATT
TGGGAAAATACACAATATCAAAAGGAGTTCATGCACATGAGAAGGGCTAG
AAGGGAGTTTGAGAATATCAATACCAGAAGAGCACACACTCTGAAACAAG
CAGGGCGCAGGTTTCCAATAAAACACTACTGTAACTACACAATACTATGT
TCCAAGTTACAGAAACTCAACACAGAAGCAATGTATCTGTCTAAAAGCAT
TTTAGACAAGATTCAGAATGCAAGATTTAATGACATGACTGTAGTCTACA
TTTCAGTTCCCTTTTACTCCTTTCCTCTCAGACATCCTTTTTGTTCTTCA
TAATCAATCCATAGTATTGTCTAAAATAATGAACTCATCTAAATACAGTT
CACAGTTTGATCAACTTTCAAGTGTTTTTCTTTAAAAATTGCTTATTTCC
TGGGTTCTATGATGTCTCCACATTTTATTTATTGCCCATTTCCAGGTTTT
TATGAGCTTAATGTTTCCATTTTCTCAAAATTCATATGCCAGAGCCCTAC
TCCCTATTGCAATGGTAGTAGAAATTTGAGCCTGTTGGAGATAACACATT
TCAGTGAGGTCATGAAGGTAGACTCCTTTCCCTTAAAGATATTTAATATC

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTTGAGGATTCTTTGTTTAG
TTCTGTAGCCCAATTTTTAATGGGGCCACTTGAATTTCTGGAGTCTAGCT
TCTTAAGCTCTTTGTATATATTGGATATTAGTCCCCCATCAGATTTAGGA
TTGGTAAAAATCCTTTCCCAATCTTTGGTGGCCTTTTTGACTTATTGACA
GTGTCTTTTGCCTTACAGAAGCTTTGTAATTTTATGAGGTCCCATTTGTC
AATTCTAGATCTTACAGCACAAGCTATTGCTCTTCTGTTTAGGAATTTTT
CCCCTGTGCCCATATCTTTGATATCTTTTCCCAACTTTTTCTTTTATAAA
TTTCAGTGTCTCTAGTTTTATGCGCAGTTCTTTGATCCATATAGACTTGA
GTCTTGTACAAGGAGATAAGAATGGATTAATTAGCATTTTTCTACATGAT
AACCACCAGTTGTGCCAGCACCATATGTTGAAAATGCTGTCCTTTTTCCA
CTGGATAGTTTTAGCTTCCTTGTCAAAGATCATGTGACCATTAGGTGTGT
GGATTCATTTCTGGGTCTCCAATTCTATTCCATTGGTCTACCTGTCTGTC
TTTGTACCAGTATCATGCAGTTTTTCTCACAATTGCTCTGTAGTACAGCT
TGAGGTCAAGCATGATGATTCCAACAGAGGTTCTTTTATTGTTGAGAATA
A

Query= MSMg01no293_d22.b1 MSMg01no293_d22.b1 CHROMAT_FILE:
MSMg01no293_d22.b1 PHD_FILE: MSMg01no293_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:35 2005
         (706 letters)



>mm_chr1_3157634_3158739
          Length = 1106

 Score = 1303 bits (674), Expect = 0.0
 Identities = 695/702 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttatatgatttctttctcctggtacttaaaagtgcaacattaagaatgtggc 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttatatgatttctttgtcctggtacttaaaagtgcaacattaagaatgtggc 264

                                                                       
Query: 65  aatgtggatatgtacagctattatagttttaattacttaatttgggaaaatacacaatat 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgtggatatgtacagttattatagttttaattacttaatttgggaaaatacacaatat 324

                                                                       
Query: 125 caaaaggagttcatgcacatgagaagggctagaagggagtttgagaatatcaataccaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaaggagttcatgcacatgagaagggctagaagggagtttgagaatatcaataccaga 384

                                                                       
Query: 185 agagcacacactctgaaacaagcagggcgcaggtttccaataaaacactactgtaactac 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 agagcacacactctgaaacaagcagggtgcaggtttccaataaaacactactgtaactac 444

                                                                       
Query: 245 acaatactatgttccaagttacagaaactcaacacagaagcaatgtatctgtctaaaagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaatactatgttccaagttacagaaactcaacacagaagcaatgtatctgtctaaaagc 504

                                                                       
Query: 305 attttagacaagattcagaatgcaagatttaatgacatgactgtagtctacatttcagtt 364
           |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct: 505 attttagacaagattcagaaggcaagctttaatgacatgactggagtctacatttcagtt 564

                                                                       
Query: 365 cccttttactcctttcctctcagacatcctttttgttcttcataatcaatccatagtatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccttttactcctttcctctcagacatcctttttgttcttcataatcaatccatagtatt 624

                                                                       
Query: 425 gtctaaaataatgaactcatctaaatacagttcacagtttgatcaactttcaagtgtttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctaaaataatgaactcatctaaatacagttcacagtttgatcaactttcaagtgtttt 684

                                                                       
Query: 485 tctttaaaaattgcttatttcctgggttctatgatgtctccacattttatttattgccca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctttaaaaattgcttatttcctgggttctatgatgtctccacattttatttattgccca 744

                                                                       
Query: 545 tttccaggtttttatgagcttaatgtttccattttctcaaaattcatatgccagagccct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttccaggtttttatgagcttaatgtttccattttctcaaaattcatatgccagagccct 804

                                                                       
Query: 605 actccctattgcaatggtagtagaaatttgagcctgttggagataacacatttcagtgag 664
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 805 actccctattgcaatggtagtagaaatttgagcctattggagataacacatttcagtgag 864

                                                     
Query: 665 gtcatgaaggtagactcctttcccttaaagatatttaatatc 706
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gtcatgaaggtagactcctttcccttaaagatatttaatatc 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)