BAC Information

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BAC

Clone NameMSMg01-293F07
Chromosome1 (Build37)
Map Location 133,842,846 - 133,843,138
singlet/doubletsinglet
Overlap genenone
Upstream geneIl10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1
Downstream geneSlc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293F07.T7 (MSMg01no293_f07.b1)MSMg01-293F07.TJ (MSMg01no293_f07.g1)
ACCAG421812AG421813
length768772
length of high quality
(start - end)
247 (130 - 376)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no293_f07.b1 PHD_FILE: MSMg01no293_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:42 2005CHROMAT_FILE: MSMg01no293_f07.g1 PHD_FILE: MSMg01no293_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAGAGGACTCTCTAATAGCTGAGAAACACTTAAAGAAATGT
TCAACATCCTTACTCATCATGAAAACGCAAAACAACTCTGAGATTCTACC
TTACACCCATCAGAAATGGCTAAGATCAAAACTCAAGGAACAGCTCATGC
TGGAGATGATGTGGAGCAAGGGGAACACTCCTCCATTGCTGGGAGGAGTA
CAAACTTGAACAACTACTCTGGAAATCAAAGCCCCACTATACCACTCCTG
GACATATACCCAAAAGATGTTCCACCATCCTACAAGGACATTTGGTCAAC
TATGTTCATAGAAGTTTTCTTTGTAATAGCCACAAACTGGAAAAAAAAAA
AACTAGGTGTCTCTCAACTGAAAAATGGATACCACATTGATTCATTTACA
CAATGGCATTTAATACAGCTATTAGAAACAAGAACATCATGAAATTTGCA
GGCAAATAAATGGAATTAGAAGATATCATCCTGAGTAAAATAACCCTGAC
TGAAAAGCCCATGCATGGTATGGACTCACTTATAAATGAATATTAGTTGT
AAAGTACAGGATAACCGTGCTACAATCCATAGACCAGAAGAAGCCAAATA
GTAAGGAGGGTCAAAGAGGGGATGGTGGAATCTTTCTCAGAAAGGGAAAT
AAAATGGATATCGGAGGTGAATGGAGGGAAGGAGGGACCGAGCTCCCAGA
CTAATATACCTACCGACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTCCTCTTCTATTCCAAAAG
GAGGAATGAGGCAAGCTAGATTTCTAGCATTTGGGAGGCTGAGGCAGGAT
GATTAAGAGTTTGGTATTCTGCAAACTCTACAGGGAGCCAGAGGTACCTA
AAATTGTACTGGAGGGATATCTCAAGTGTAGCCCACTCCACGAGACTCAG
GCAGACTCAGCCAGGATCCAGCAAAAGAGAAGGAAGAGAGAGGCTTCTCA
CAGGAGGCATCTGCTCACCCTTCCCCCTCCACTTCAGCATCAGAGAGTGA
GGACCAGGTAGGAGCTCATGATTTTGTGTTCCGTATCCGACTAGGGGATA
CTAGTTTTCTGCCACTCCCACCTGCTTACCACTCATGGTCCCTAAACCGG
AAGATCTGACCAGTCAAGAGGATCCTGGGAAGTAGGCCTGGCTTGAACCC
TTACTGGATTCTAGGACATTCCAACCAAAGCCCTTCTCTGGATCACTCCA
CATGCATAAAGACATACAGAAGCACCGTGTTTACCAGGTGGTTCTCAGGA
TCAGAACAAACAGACAGACAGTACCTAAGGCAAGGCATGCAGGGGCCCAC
GGGGGTGGGGGGGGGGGATATCTTTCCTTTTCTTCTTCTTTTCGTTGCTC
TGCCCTGTGTCTATTATTTTTGTTTCTTTTACATCTTCCCTCGATTTTTC
CCTTCTTTTTTCCTTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_f07.g1 MSMg01no293_f07.g1 CHROMAT_FILE:
MSMg01no293_f07.g1 PHD_FILE: MSMg01no293_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:42 2005
         (293 letters)



>mm_chr1_133842561_133843253
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctttcctcttctattccaaaaggaggaatgaggcaagctagatttctagcatttggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctctttcctcttctattccaaaaggaggaatgaggcaagctagatttctagcatttggga 519

                                                                       
Query: 61  ggctgaggcaggatgattaagagtttggtattctgcaaactctacagggagccagaggta 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggctgaggcaggaggattaagagtttggtattctgcaaactctacagggagccagaggta 459

                                                                       
Query: 121 cctaaaattgtactggagggatatctcaagtgtagcccactccacgagactcaggcagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cctaaaattgtactggagggatatctcaagtgtagcccactccacgagactcaggcagac 399

                                                                       
Query: 181 tcagccaggatccagcaaaagagaaggaagagagaggcttctcacaggaggcatctgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 398 tcagccaggatccagcaaaagagaaggaagagagaggcttctcaccggaggcatctgctc 339

                                                                
Query: 241 acccttccccctccacttcagcatcagagagtgaggaccaggtaggagctcat 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acccttccccctccacttcagcatcagagagtgaggaccaggtaggagctcat 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)