BAC Information

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BAC

Clone NameMSMg01-293G05
Chromosome1 (Build37)
Map Location 42,084,418 - 42,245,461
singlet/doubletdoublet
Overlap geneLOC383634, LOC666582
Upstream geneLOC100041441
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293G05.T7 (MSMg01no293_g05.b1)MSMg01-293G05.TJ (MSMg01no293_g05.g1)
ACCAG421854AG421855
length729758
length of high quality
(start - end)
319 (40 - 358)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no293_g05.b1 PHD_FILE: MSMg01no293_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:46 2005CHROMAT_FILE: MSMg01no293_g05.g1 PHD_FILE: MSMg01no293_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,245,150 - 42,245,461)(42,084,418 - 42,084,703)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AAAATCACTGTTAGCTGTTTTGTTACTAAAATCTAGAGGACTCTTGGCGG
GCTACATGACTGGCTACCTTCTGGACTTGGAGAAGCTCTTAGTGTTTTGG
AGAAGATCGGCAAGGACAGATAAGAAGCTTGGGAATGGATAGAAATACTT
TTCACATCAGAGTTTTTGTTTTAGGAAGACGCTTCTTCCAAGTCACAGGC
AGCTGTAGCATTTACCCAACAGACCAGGTAATGTTTTAAGGCAGGCTAAA
AACACACCTGACAGAGTTATAGATATGACAACTTTACTAACAACATTTTG
CGTAAATTATTTATTGTACCCCCACCCCCCTATGTATGTTGTGTTAGAAG
ATATCATATTTAAAGACCCACCTTCCTGTTTGGATAAAAAAATTATTCTT
CCAGGAGTACTATAGGTTTCCAATATACATCTGCTTTACCCGAGTAGAAC
TTTACCTTAAAATTTTTTTTTACTGATGTTGAAACAGCTGGACTCACATT
AGCACTGCTAAATTAGGGTTTCGGTGAAATCAGTGTAAACAAAAATCTCT
ACATTCACATACCTAGAAGGAATTCGGTTGGCAAACAATTGAAATGTGTG
TCTCATTTTGGTAAACATGAGGTGATTCCCATGTTCTCTTAAATTATGAT
AATTATAGCTACTTTCCTCAGACGACTAG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGTTTTCAAGCTTGGCAACAAGAAACATC
TCAACAACTCACACTTAACATCTTTAAAGATGATCCTGAACACTAAATCT
AACTTTTCTAACTGTAATATAAGAATAGAAATGGATTATAAATATCTTAG
GTCAATATCAAACCGCAACAACTAAGAGTTAAACAAACTGGACAATGTCT
ATTGGATGTAGTGCATAAAATGTTTGCTGTGCAAGTATGAAGTATGAGTT
TATATTCTCACCACTCATGTATTATCATCGATGGTTGCATGAAGCTTTAA
TTATGTTGTTTTTATACCCCCGACCCCCCCACACAGATACTGGAAGTATC
CTGGAAGATTCTATGACCACTGAAAAGAAAATATGCAGTCATGAACAGCA
TGATGACTGTGTCTCACACAAGAAGAATGTGAACCTGTTTTCTGACTTCA
TGACACTTGCTGTGACATGCCCCTGCCTGCCTGCTCATATACTCATCTGT
TCATTCATACTTCCTCCCACTCTTACCCTTCCACTCTCCTCTATTATTCT
TTAATGTGCCTCCATAATTATAGTTTTTCCCTCGACCTACTCCATTGATA
GTCTATACTTTATTGCTTCTCCATATTTCAAGCCCTCCATGAATCATTAC
TCCATCGTTGTTATCCTCACTTCGCTGTTTGGTGTTTTTCTTTTTCGCTG
ATCGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_g05.b1 MSMg01no293_g05.b1 CHROMAT_FILE:
MSMg01no293_g05.b1 PHD_FILE: MSMg01no293_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:46 2005
         (319 letters)



>mm_chr1_42244943_42245661
          Length = 719

 Score =  549 bits (284), Expect = e-161
 Identities = 305/312 (97%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctaaaatcactgttagctgttttgttactaaaatctagaggactcttggcgggctaca 67
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 519 ttctaaaatcactgttagctgttttgttactaaaatctagaggattcttggcgggctaca 460

                                                                       
Query: 68  tgactggctaccttctggacttggagaagctcttagtgttttggagaagatcggcaagga 127
           ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 459 tgactggctacattctggacttggagaagctcgtagtgttttggagaagattggcaagga 400

                                                                       
Query: 128 cagataagaagcttgggaatggatagaaatacttttcacatcagagtttttgttttagga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagataagaagcttgggaatggatagaaatacttttcacatcagagtttttgttttagga 340

                                                                       
Query: 188 agacgcttcttccaagtcacaggcagctgtagcatttacccaacagaccaggtaatgttt 247
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 339 agacgcttcttccaagtcacaggcagctgtaacatttacccaatagaccaggtaatgttt 280

                                                                       
Query: 248 taaggcaggctaaaaacacacctgacagagttatagatatgacaactttactaacaacat 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taaggcaggctaaaaacacacctgacagagttatagatatgacaactttactaacaacat 220

                       
Query: 308 tttgcgtaaatt 319
           ||||| ||||||
Sbjct: 219 tttgcataaatt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no293_g05.g1 MSMg01no293_g05.g1 CHROMAT_FILE:
MSMg01no293_g05.g1 PHD_FILE: MSMg01no293_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:47 2005
         (286 letters)



>mm_chr1_42084218_42084903
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggttttcaagcttggcaacaagaaacatctcaacaactcacacttaacatctttaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaggttttcaagcttggcaacaagaaacatctcaacaactcacacttaagatctttaaag 260

                                                                       
Query: 61  atgatcctgaacactaaatctaacttttctaactgtaatataagaatagaaatggattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgatcctgaacactaaatctaacttttctaactgtaatataagaatagaaatggattat 320

                                                                       
Query: 121 aaatatcttaggtcaatatcaaaccgcaacaactaagagttaaacaaactggacaatgtc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacatcttaggtcaatatcaaaccgcaacaactaagagttaaacaaactggacaatgtc 380

                                                                       
Query: 181 tattggatgtagtgcataaaatgtttgctgtgcaagtatgaagtatgagtttatattctc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattggatatagtgcataaaatgtttgctgtgcaagtatgaagtatgagtttatattctc 440

                                                         
Query: 241 accactcatgtattatcatcgatggttgcatgaagctttaattatg 286
           |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 441 accactcatgtaatattatcgatggttgcatgaagctttaattatg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)