BAC Information

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BAC

Clone NameMSMg01-293H19
Chromosome1 (Build37)
Map Location 122,872,366 - 122,872,651
singlet/doubletsinglet
Overlap genenone
Upstream geneGm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
Downstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293H19.T7 (MSMg01no293_h19.b1)MSMg01-293H19.TJ (MSMg01no293_h19.g1)
ACCAG421927AG421928
length740749
length of high quality
(start - end)
647 (46 - 692)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no293_h19.b1 PHD_FILE: MSMg01no293_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:54 2005CHROMAT_FILE: MSMg01no293_h19.g1 PHD_FILE: MSMg01no293_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGACTATTACCTTTGAGGTGGGTGGGTGAGGTGGCCCTGTCGTTC
AACTGGGAGCCATGCCTATCCATTGGATATGGTTTTTACAGGTTATATTT
CCCTTTTGTTGGGTATTTTGGCTAATGTCCTCTTTGTTGGGTCCTGGGAG
CCTCTTGGGTCCCTGGCATCTGGAACTTTCTAGTAAGTATTACTCTTTCT
CCCTCCAATTTTCACTTGCTTCCTGGATACCCAGTTCCAGAGAACTGTTT
TTTGTTTGTTTGTTTGTTTTTTGTTTTTTTTTTAATTGAAAATAGATTCT
CCTCTAACTCACTAGGACCCATAGGGTCTCACAGAGACTGAAGCAAAAAT
CAGGGAGCCTGTATGGATCTGTTAGGGTTGTGTAGCTTGGAGTTCTTGTG
GGAGCAGTGTCCCTTAAACCTCTCTAACTCCTATAGTCTTGTGCCCTAAC
AGTGAGAGCAAGGGCTGCCTCAGACTCCTTTGCCTGCTCTAGGGACCCTA
TTCCTCTTACCGGGTTACTTCAACCAGCCTTAATATGAAGATATAGGTCT
AGTCTTAGTGTACCTTGTTATAACATGTTTTGTTGATTGCCTTAGGAGGC
CTGCTCTTTTCTGAAGTGAAATGGAGGGGGAGTGGATCTGGGGGAGAGGA
ATGTATGATGCCCCACTTTTTTCTCTTTTCCTTCTATTCA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGCTGTCCATCTAACTCCCAG
TTTGTGTTGGTGTCATCACCATTTACACACTGTCCAGATACTTGCCACAA
GGGGCAAGTAGCTGGTCAGAATCTGCAGTCAGTAAGTGAATGTAAGGGTC
TCAAGCTGTACTCTGAGCACTCCATCTTCAGAGTCCATATTTAAATCACC
CCTCATGGCGCCAACCTTAGGTACCATCCTTAGGTGCTTGCTGTGGGATC
AGCCCTCGCTAAGTGCTGTGCGTTCTGAGTACAGCGAATGAGTTCTTGTG
GTGCCACCATCATTATTTTTGTTCCCCCCCCACCCATGTGAAAAAGCCAA
GGCTGAGAATTGAAAGCCTGCCTTTCATTATAAATGTATTAGGGGGAAAG
AGGGTAAAAAAAATGAACAGGAGAGAAGGATGCCTACTAAAGTGGTTCTG
TCCATAATCATCCTGCAAGCCACCCTTCTTTTCTTCATATCTTCTAGAAT
AGCTGTACAACTCAGTTACAGCTTATTTTCTCTGTGCCCTATGTCCAAAC
TGTGTGGCATCTTCATCACTAGGGTTGATCACATAGCTCAGGTAGTCATA
CAAGAGCCACAGAATGGCTTGTACTATCTGGGGAGTTTCTGGACAATATT
TAGGCTACAAAAGTTAATAGTCTTCTACATCCAGGGCCATATTTATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_h19.g1 MSMg01no293_h19.g1 CHROMAT_FILE:
MSMg01no293_h19.g1 PHD_FILE: MSMg01no293_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:55 2005
         (287 letters)



>mm_chr1_122872166_122872852
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggctgtccatctaactcccagtttgtgttggtgtcatcaccatttacacactgtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggctgtccatctaactcccagtttgtgttggtgtcatcaccatttacacactgtcca 260

                                                                       
Query: 61  gatacttgccacaaggggcaagtagctggtcagaatctgcagtcagtaagtgaatgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatacttgccacaaggggcaagtagctggtcagaatctgcagtcagtaagtgaatgtaag 320

                                                                       
Query: 121 ggtctcaagctgtactctgagcactccatcttcagagtccatatttaaatcacccctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtctcaagctgtactctgagcactccatcttcagagtccatatttaaatcacccctcat 380

                                                                       
Query: 181 ggcgccaaccttaggtaccatccttaggtgcttgctgtgggatcagccctcgctaagtgc 240
           ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct: 381 ggcgccaaccttaggtaccatccttaggtgcttgccgtgggatcaacccttgctaagtgc 440

                                                         
Query: 241 tgtgcgttctgagtacagcgaatgagttcttgtggtgccaccatca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcgttctgagtacagcgaatgagttcttgtggtgccaccatca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)