BAC Information

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BAC

Clone NameMSMg01-293J03
Chromosome1 (Build37)
Map Location 30,427,383 - 30,427,636
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293J03.T7 (MSMg01no293_j03.b1)MSMg01-293J03.TJ (MSMg01no293_j03.g1)
ACCAG421987AG421988
length793739
length of high quality
(start - end)
49 (77 - 125)295 (73 - 367)
definitionCHROMAT_FILE: MSMg01no293_j03.b1 PHD_FILE: MSMg01no293_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:01 2005CHROMAT_FILE: MSMg01no293_j03.g1 PHD_FILE: MSMg01no293_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGAAGCGTAGGCG
GAATTCTTGGCTAAATANCTGAATGAATATATATATATATATATATGTAT
ATATATTATATGTATATATATATTTGTGCTGGAAGAAGGAGNGGANNGGA
ANAAAAAAAGAAAAGGGGTAATAGAGAGAGGAGAGGGAGATAAGATAAGA
GTATGTATTTTATAAATAAAAAATTGGAATGTATTTTGTGATGTATAGTA
GTGAATATTTTTTTTTTATTTAATTATTGATGTGAATAAGGTAAGATTCT
GTTTTATTGGAGTGGGAAGAAAATTTATAGTAATTTTGGAAAAAAGAAGG
AAAAGGAAGAAAAATTTTGAATGGGTTTCCCGCCCCCCCCACAGAAAGAA
AAATAGAAAAAGGGGGGGTGGGTCCCCCTTAAAAAAAAAAAAAAAATGTG
GGGGGGGGGGGGGGGGTTTGTTTTGTGGCGTTTTTCTTAATTTAGTTGAA
ATTAAATATTGTATTTGTAAATATAAATGGGATATGTTGTATTGTGGTTT
AATTGTTTTTGAGAAGATTGAGGTTAGAAAAGAATTTATGAAGAAGGTGT
TATTGAGTATGTTTATTTATATAAGAGTAGGGAATTACTTTATTGTAAGA
TATGAAGGTTTATTGTTTAAATAATTAGTTATTGTGAAGTATAGGATTTT
TTATTTTTTTTTTTAGAGGTTATGAAGATAGAATTATTTTTAGTTTGTTA
TTTTTTTTATTGGTGGATTAATGATATTTGATTTTTATTGTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTTGATGGCTTTGCCTAGGCTCTATT
TTGTTTGTTTGTTTTAGGAGAGGGGCTTATATGATTATTTCTAAGGCACC
TCTTTACAATTGCTTTTTAAATTTTCTGAATGAGAGTTAGCTCCTATTTT
CAAAACAAAACAAAGCAAGAAAAGGAGTCATAGCTACTTCTAACAGTGCT
TCAAATTCCTCCAAACCTTCTCATATACTGCTCACTGTTCTCCTTCCCAT
TCATAGTCTCCTTTTATATCTGTTGTCATATGTACAAATGCATATGCATA
TACAGCTAGATTCCTGATCATAACATGCGCAGCCTGTGCAACGTCACTTG
TAAATGTGATTTTAACAAACGTGACCATTTGTTATTGGATAATCAAATGA
TGTGTTCTCTGGGGAAGAGTATTTCTCTATCCCTTATTTGCCTATAGTTC
TTTGTGTAGGGTAAAAGTCTCTTTCCCACCCACCTACTTTGTCATGTATA
TTTCTGCTGTTCAGCTCATATTCAGACAGTCATATCGATGAGACCTCGGT
GTAGCTTTTAAAATTACTACGATACACAATCTCACAGCAAACTCCCTGAT
CCTTTCATTTTTACAATCCTTCCATAGCTTCTTCTGCAGTGTTCCCTAAA
GTGTTAGGTTTGGGAACTGTCTTTGAGATACATCACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_j03.g1 MSMg01no293_j03.g1 CHROMAT_FILE:
MSMg01no293_j03.g1 PHD_FILE: MSMg01no293_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:01 2005
         (295 letters)



>mm_chr1_30427288_30427980
          Length = 693

 Score =  397 bits (205), Expect = e-115
 Identities = 237/255 (92%), Gaps = 13/255 (5%)
 Strand = Plus / Minus

                                                                       
Query: 51  gggcttatatgattatttctaaggcacctctttacaattgctttttaaattttctgaatg 110
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gggc-tatatgattatttctaaggcacctctttacaattgctttttaaattttctgaatg 291

                                                                       
Query: 111 agagttagctcctattttcaaaac------------aaaacaaagcaagaaaaggagtca 158
           ||| ||||||||||||||||||||            ||||||||||||||||||||||||
Sbjct: 290 agaattagctcctattttcaaaacaaaacaaaacaaaaaacaaagcaagaaaaggagtca 231

                                                                       
Query: 159 tagctacttctaacagtgcttcaaattcctccaaaccttctcatatactgctcactgttc 218
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 230 tagctacttctaacagtgcttccaattcctccaaaccttctcatatactgctcactgttc 171

                                                                       
Query: 219 tccttcccattcatagtctccttttatatctgttgtcatatgtacaaatgcatatgcata 278
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 170 tccttcccattcatagtctccttttatatttgttgtcacatgtacaaatgcatatgcata 111

                          
Query: 279 tacagctagattcct 293
           |||||| ||||||||
Sbjct: 110 tacagccagattcct 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 693
Length adjustment: 9
Effective length of query: 286
Effective length of database: 684
Effective search space:   195624
Effective search space used:   195624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)