CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGATTTTATATATAGCAGATGATTATATATATAAAACAGGTAT
TTATCAGTTAAAATGATAGGAGTAGGCCCACAAGTAATAACATTGATAAC
CCTTGAGAATACTGCACACAAGAGGATATGTTTCATATGTGTGTGGAAGA
AATGCATGCCAATATTAGAACAGCAATGATATCTTGGTCACGAGAAGAGA
AAGAAGTTGGCTGGAGTGTTAAGGGGATTTCAACTCTAACACCTTATTTC
TTCTTTAGATATTTGTAATGAGAGAGATACCAGAAGGGAGGGAGGTAGTC
GAGCCAATGAATATGGTCTGGTTTTTCCAAAGTTCAGAGAGGAAAAAAGA
AAGAGGGATTGATGGCACCCTCAGGAAGACACTGGGCCAGCAAAGTTACT
CAACCAACACTTTATTACAACTTGTCATAGGAATGAACTCATTTATTGCA
GGCCAGGGCTGCTCAAACAGTAGCACTTCTACTGGTCTTTCATTTCCTTC
AGTCTCCTGATGGCAGGTTTGACTGTGACAGCAGAAGTGATGTTGTAAAT
CTAGGACCCACCAGCCACTGTTGCCGTGAAGGAACCACAGTGCCAGATGA
CAGTGGCCCCCATTATTATCTTGGTCTTGCCACAGAGGATCCTGATGTGC
TGGTTGATTTCAATTTTTGTCACCATTTTCTGGAGAGAGGCACCACAATG
ATCCAGGGCTTCTTGGTACTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CATTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
ACAGTCTGGTGGTTCCACAGAAAATTGGACATAGTACTAACGGAAGATCC
CGCAATACCTCTCCTGGGCTTATACCCAGAAAATGTTCCAAGTGGAAAGA
AGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TAATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAGGAACTCTCACAACATGTACTCACTGATAAG
TGGATATTAGCCAAGAAACTTAGGATACCCAAGATATAAGATACAATTTG
CTAAACTCATGAAATTCAAGAAGAACGAGGACCAAAGTGTGGACACTTTG
CCCCCTCTTAGAATTGGGAACAA

Query= MSMg01no293_n10.b1 MSMg01no293_n10.b1 CHROMAT_FILE:
MSMg01no293_n10.b1 PHD_FILE: MSMg01no293_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:22 2005
         (692 letters)



>mm_chr1_159349871_159350965
          Length = 1095

 Score = 1154 bits (597), Expect = 0.0
 Identities = 668/695 (96%), Gaps = 11/695 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgattttatatatagcagatgattatatatataaaacaggtatttatcagtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 895 gaattctatgattttatatatagcagatgattatatatataaaacaggtatttatcactt 836

                                                                       
Query: 65  aaaatgataggagtaggcccacaagtaataacattgataacccttgag-----aatactg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||
Sbjct: 835 aaaatgataggagtaggcccacaagtaataacattgataacccttgagaatataatactg 776

                                                                       
Query: 120 cacacaagaggatatgtttcatatgtgtgtggaagaaatgcatgccaatattagaacagc 179
           ||||||| ||||||||||||  |||||||||||||||||||||| ||| |||||||||||
Sbjct: 775 cacacaaaaggatatgtttc--atgtgtgtggaagaaatgcatgtcaacattagaacagc 718

                                                                       
Query: 180 aatgatatcttggtcacgagaagagaaagaagttggctggagtgttaaggggatttcaac 239
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 717 aatgatatcttggtcacaagaagagaaaggagttggctggagtgttaaggggatttcaac 658

                                                                       
Query: 240 tctaacaccttatttcttctttagatatttgtaatgagagagataccagaagggagggag 299
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 657 tctaacaccttatttcttctttagatatttgtagggagagagataccagaagggagggag 598

                                                                       
Query: 300 gtagtc-gagccaatgaatatggtctggtttttccaaagttcagagaggaaaaaagaaag 358
           |||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 597 gtag-cggagccaatgaatatggtctggtttttcgaaagttcagagaggaaaaaagaaag 539

                                                                       
Query: 359 agggattgatggcaccctcaggaagacactgggccagcaaagttactcaaccaacacttt 418
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agggattgatggtagcttcaggaagacactgggccagcaaagttactcaaccaacacttt 479

                                                                       
Query: 419 attacaa-cttgtcataggaatgaactcatttattgcaggccagggctgctcaaacagta 477
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 attacaacctt-tcataggaatgaactcatttattgcaggccagggctgctcaaacagta 420

                                                                       
Query: 478 gcacttctactggtctttcatttccttcagtctcctgatggcaggtttgactgtgacagc 537
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 419 gcacttctactggtctttaatttccttcagtctcctgatggccggtttgactgtgacagc 360

                                                                       
Query: 538 agaagtgatgttgtaaatctaggacccaccagccactgttgccgtgaaggaaccacagtg 597
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 359 agaagtgatgttgtaaatctaggacccaccagccactgttgtcgtgaaggaaccacagtg 300

                                                                       
Query: 598 ccagatgacagtggcccccattattatcttggtcttgccacagaggatcctgatgtgctg 657
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ccagatgacagtgtcccccattattatcttggtcttgccacagaggatcctgatgtgctg 240

                                              
Query: 658 gttgatttcaatttttgtcaccattttctggagag 692
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 gttgatttcaatttttgtcaccattttctggagag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1095
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1085
Effective search space:   739970
Effective search space used:   739970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)