BAC Information

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BAC

Clone NameMSMg01-293O17
Chromosome1 (Build37)
Map Location 50,689,931 - 50,690,221
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293O17.T7 (MSMg01no293_o17.b1)MSMg01-293O17.TJ (MSMg01no293_o17.g1)
ACCAG422236AG422237
length758797
length of high quality
(start - end)
367 (376 - 742)291 (62 - 352)
definitionCHROMAT_FILE: MSMg01no293_o17.b1 PHD_FILE: MSMg01no293_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:28 2005CHROMAT_FILE: MSMg01no293_o17.g1 PHD_FILE: MSMg01no293_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGTATCAA
AATCTGCAGATGATATGATAGTATACATAAGCAACCTGAAAGTATCTACC
AAAGAACTCATACCCCTAGTAAACAACTTCAGTAAAGTAACTGGATATAA
AACTAACTCAAGCAAATCAGTAAGCTTTCTTTAAACAAATGATAAATGGG
CCGACAAAGAAAATAGGGCAAAAACACCCTTCACAATAGTTACAAATAAT
ATAAAATATCTTGTGGGTAACTCTAACTAGACATATGAAAGACCTGTATG
ACAAGAACTTCAAGTTTCTCAAGAAAGAAATCAAAGAAGATCTCAGAAAA
TGGAGACATCTCCCATGGCCACGCATCTGTAGGACTAACAGAGTAAAAAT
GACCATTCTACCCCAGCAATATACAGATTCAATATACTCTCCATCAAAAT
CCCAACACAATTCCTCAAAGACATGGAAAGAGCAATTCTCAAGGTTATAT
GGAAAATCAAAAAACCCAGGATAGTGAGAACCATTTTTAACAATAAAAGA
AATTCTAGGAGTGTCACCATACCTGATCTCAAATATACTACAGAGTAATA
GTGATAAAAACGGCATGGTACTTTTACAAAGACAGACAGGTTGATCACTG
GAATAGAATCAAAGACCCAGATATAANACCACACACTAAGGGACACTTGA
TCTTTGACAAAGAAGCCAAAATATACCATAAAAAATAGAAACTATCTTTC
AATAATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATAAGAGGGGAGACTATATAAGTCTCTCTGGTTATATC
TGCTCATTCAGTTCAATTCGTAAGTCAATAAATCACATGTTCAAAATTTA
TTATTTAGGTAAACATCATTTTACAAACTGAATATTTAAGTAAAGCAAAG
CAAAGCTCGGACATAGTGAAAGATTTCAATCTCTTGGATCTAGCAAATGT
TTATTGTTGAATTGAACTTGGATTGTCTGACTCACAATTCAAGCAAGGTT
CACCTGAAAGCTGATATTCTGCAGCAGAGTTCTGGGGATGATTTCTGAGA
CTCTTTTTTATTTTTCACCCCCCCCCCCGCCCACTAATTCGACAATACCA
ACACTTTCAATTATAATGGAGGTTTAAAAGAGCATTCTTCACTATAAGCA
TTTGCTATTGTGCTTGACAATTACATAATGGCTGTTCTCACCAGCAGCCT
CTGGCACCCACAGATTATTTCTCATTGCTTCTGAATGCTTGCTCTAATTA
CTAAAGAACCTTTACAGCCCCCGCATAATATACCTTCTCCCATCTTTATG
CTCTTATATACACATTACTGTGCCACAAATTCTCCTCTCCCGAACCGCAA
ATTATGTCTCCCACCCGCCACGTAACAACTGTCTCCCCCCCGCAAAGATT
CATTATCCATTTGTTTCCCCCTATATACCTTTCTGGCCCCAGCCTTTCAC
TACCCTCACCACCCATTTCTTCACACACTTATCTCAACTTGACCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_o17.g1 MSMg01no293_o17.g1 CHROMAT_FILE:
MSMg01no293_o17.g1 PHD_FILE: MSMg01no293_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:28 2005
         (291 letters)



>mm_chr1_50689731_50690421
          Length = 691

 Score =  493 bits (255), Expect = e-144
 Identities = 282/291 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataagaggggagactatataagtctctctggttatatctgctcattcagttcaattcgt 60
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct: 491 cataagaggggagactatataagcctctctggtcatatctgctcattcagttcaatttgt 432

                                                                       
Query: 61  aagtcaataaatcacatgttcaaaatttattatttaggtaaacatcattttacaaactga 120
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 431 cagtcaataaatcacatgttcaaaatttattgtttaggtaaacatcattttacaaactga 372

                                                                       
Query: 121 atatttaagtaaagcaaagcaaagctcggacatagtgaaagatttcaatctcttggatct 180
           ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 371 atatttaagtaaagcaaagcaaatcttggacatagtgaaaggtttcaatctcttggatct 312

                                                                       
Query: 181 agcaaatgtttattgttgaattgaacttggattgtctgactcacaattcaagcaaggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agcaaatgtttattgttgaattgaacttggattgtctgactcacaattcaagcaaggttc 252

                                                              
Query: 241 acctgaaagctgatattctgcagcagagttctggggatgatttctgagact 291
           | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aactgaaagctgatattctgcagcagagttctggggatgatttctgagact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)