BAC Information

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BAC

Clone NameMSMg01-294E04
Chromosome1 (Build37)
Map Location 89,763,290 - 89,763,597
singlet/doubletsinglet
Overlap genenone
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294E04.T7 (MSMg01no294_e04.b1)MSMg01-294E04.TJ (MSMg01no294_e04.g1)
ACCAG422480AG422481
length729729
length of high quality
(start - end)
315 (42 - 356)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no294_e04.b1 PHD_FILE: MSMg01no294_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:54 2005CHROMAT_FILE: MSMg01no294_e04.g1 PHD_FILE: MSMg01no294_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCTTGCTGAGGCCATTTTAGATTTAACTGAGCCCTGAAGAAAATTACC
CAGCTCTACGCTAGGAACCTAAGGCCAAGCTGCCCCAGCTAACAGCTTAT
TTTAGCTTCTGTTAAATTGCCTGCCTGTGCAAACCTTCCTCTGCAGCTGC
TAAGTGAGTGAGAAACCAGGATGTGGTTTTGCCTTTAAAAAACCCCTTAC
TCTAAACACTCAATGCTATTCTTGGGTCCTGAATATCTGAGTGTAATTTT
AGAAAGCTGGAATAAAGACTTTCAATTGGCTACAAACTGCATCTGGCGTT
ATCTCTGTTGTGATCCCTCCCCCACCCCATTCAGTGTGCTTTAATCTACC
AGGTCTGGTTGTGCTTTAAAATAAAAAAAAAGAAGAGAATGAATAAAGGT
CTCTCTCCATCTCCCACATGGGGACTATAACACCCTCTACAGACAGACAC
TCACTACCAGGCTCCACTCATCACCCAGACCTTCACTGAAGGACAGCACC
CTTTTTCTCTAGGATAAAATAACACATGGGACTATAAGAAAAATCCAGGA
AAACAGTTTACTAACAATACTTCCCATTCACACATATGCACACACCAGGT
AGCCCCATATCATTTTCCCTCCGAATGCTGTTTTTTAACTAAAATCCACT
CACCAATGTATTGACTTTGCCTTGCTGCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGACAGGAATATGTAGAGAGATGTATG
TATGTAGTCTCAAACAAAACAAAATAGAATTTATTTTTAAGATTTATTAT
ATGTAAGTACACTGTAGCTGTCTTCAGACACAACAGAAGAGGGCATCAGA
TCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACT
CAGGACCTCGGGTAAGAGCAGTCAGTGCTCTTAACCACTGAGCCACCTCT
CCAGCCCCAAAATAGAGTTTTTAATTTAAAATATTTTTGAATTAATAGGA
AGAGGGTTGAATAATTCCTCGACGACCCCTGTACAAGGGTTAAAGGCAGG
GCATCAGGAATTCCCCCCAAAAAAGAAAAAATACAACCATGTGGGGGAAA
TCCAAAAAGAAATAAACAGATTTTCAAAGTAAAAATTTTAAAGGACTGGA
GATACATCTCTGTTGTCCAGTGCTTATCAATCATATGCGGGCCCCTTGTA
CTGTCGAAATAAAGTAAAAACAACCAGAAATTAAAAACTTGAGGGAAGCT
CTTAGGAGGTGGGTTTGGCTTGGGTGTATGAGCCAGAGTCTAATGCTATC
TCGGCTGCCTGGCCGCTTTCCCACTATAGTCTTATGGAGGTATTTCATTG
TTTCTCCCCTGTCTACCCTGATAAGCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_e04.b1 MSMg01no294_e04.b1 CHROMAT_FILE:
MSMg01no294_e04.b1 PHD_FILE: MSMg01no294_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:54 2005
         (315 letters)



>mm_chr1_89763290_89764004
          Length = 715

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcttgctgaggccattttagatttaactgagccctgaagaaaattacccagct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaattcttcttgctgaggccattttagatttaactgagccctgaagaaaattacccagct 249

                                                                       
Query: 65  ctacgctaggaacctaaggccaagctgccccagctaacagcttattttagcttctgttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctacgctaggaacctaaggccaagctgccccagctaacagcttattttagcttctgttaa 189

                                                                       
Query: 125 attgcctgcctgtgcaaaccttcctctgcagctgctaagtgagtgagaaaccaggatgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 attgcctgcctgtgcaaaccttcctctgcagctgctaagtgagtgagaaaccaggatgtg 129

                                                                       
Query: 185 gttttgcctttaaaaaaccccttactctaaacactcaatgctattcttgggtcctgaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gttttgcctttaaaaaaccccttactctaaacactcaatgctattcttgggtcctgaata 69

                                                                       
Query: 245 tctgagtgtaattttagaaagctggaataaagactttcaattggctacaaactgcatctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tctgagtgtaattttagaaagctggaataaagactttcaattggctacaaactgcatctg 9

                   
Query: 305 gcgttatc 312
           | ||||||
Sbjct: 8   gtgttatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)