BAC Information

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BAC

Clone NameMSMg01-294E18
Chromosome1 (Build37)
Map Location 184,610,152 - 184,610,460
singlet/doubletsinglet
Overlap genenone
Upstream geneA230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8
Downstream gene4922505E12Rik, Susd4, Tlr5, EG666649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294E18.T7 (MSMg01no294_e18.b1)MSMg01-294E18.TJ (MSMg01no294_e18.g1)
ACCAG422508AG422509
length718719
length of high quality
(start - end)
316 (42 - 357)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no294_e18.b1 PHD_FILE: MSMg01no294_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:57 2005CHROMAT_FILE: MSMg01no294_e18.g1 PHD_FILE: MSMg01no294_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCCATGTCTCTCCAAGCCCTTCCTCCAAATGCACACTTAGTCACCCCG
TGACCCTGGCTGTTTGTCCCTCCACTGTTACTGCAGCTGCTTCAGGACAG
TTGCCCCAGCCACAGGTGTCTCCTCCTCCATGCCAAGCGCTACGTTACGC
TACCTCAGAGATGTTCCTGGATGTTGCTCTCTGCTGAAACTCTGAGCAGG
AAACAGAACCAGAACAGAAACGGTGCTGGTGGGTAAACCAGCAGGTAGAG
GTGTGGTGGGCAGCCATGTTCCGACAGTCGTCTTTCTTCACCCTGGGCCT
GTGTTTTATAGTTTTCACACCGCCCACGCTTGGGTTGGAGGCTGTGTTTT
TTGCTTCCTTAACAGCAAACAAAAAAAAACATCTTTGAGGCGGCTGGGTG
GTTAAAGTGTGAAGGAAAGAGGCCCTCCTCTTCCTGTTGACCACCTGGCA
TCCCTGGTATTTAAGTTCTCATTGCATAACTGGGCCTCAGAGGCAATTGG
AGGAAAGCTCTCACAGATTTGTAGTAGCTCTGGAATGTCAAGCATCCAGG
TGCGCCTGGAAGATTAGCTGAAATGAGAGGCTGGCAAATTACAGGCTGTA
AGCCACTCCAGCCCTCCACCTGTTTCTCTGTGTGCAGTAAGCTGCCATCC
GCTTTTGTACTTTTAAAG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGTGAATCCATTCAGTCTTGGGATT
TTATTTCTTAGGAAACTCACCCTTGTTGCTTGCTATGGATCTGTTTAAAC
TGTTCATAGTGTCTGGACTTAATTTTGGTATGTCAAATATGCCCAGAAAT
TGGTTGATTTCCTCTAGATTTCTCAGTTCATTTAAAAACTTATATGTAAG
TTTCTAAAATCTCCCCTAGTGCCCTTTTGGATTTCGCTGGAGTCTGTTGC
AACATTCACCCTTCACCTAATTTCATTAATTTGGATCTTTCTTTCCTTCT
TTCTTTTTGGTTATATTTCGCCCCCCTACTTGACAATCAGGTTTATGTTG
TCAAAAATCCTCACCTATTTATTTGATATTTTAGTTTGTGGTTCATTAAT
TTTTGTTTTAACTTTGATCATTTCTTGTGGTCTACTGCTTTGGGGCTTGG
CTTGTCATTGTTTCTCCAAAAATCTAGAGATGCAGCATGAACTTACTTGT
AATTTCTCTGATTTTCTTAATATACGCACGGACAACTGTAATCTGTCCTC
TTGGACTTACCTTAGCTATAAGCATTGACAGCTCTAAACTGTCCTCTTGG
ACTTGCCTTATCAATATCCCCGAAGTTCTGGCAAGTTGTGTTTTCATTTT
AATTTGGATCTAGGAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_e18.b1 MSMg01no294_e18.b1 CHROMAT_FILE:
MSMg01no294_e18.b1 PHD_FILE: MSMg01no294_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:57 2005
         (316 letters)



>mm_chr1_184609949_184610664
          Length = 716

 Score =  555 bits (287), Expect = e-162
 Identities = 304/311 (97%), Gaps = 4/311 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatccatgtctctccaagcccttcctccaaatgcacacttagtcaccccgtgac 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 512 ggaattcatccatgtctctccaagcccttcctccaaatgcacacttagtcaccctgtgac 453

                                                                       
Query: 64  cctggct--gtttgtccctccactgttactgcagctgcttcaggacagttgccccagcca 121
           |||||||  || |||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctggctgggtgtgt--ctccactgttactgcagctgcttcaggacagttgccccagcca 395

                                                                       
Query: 122 caggtgtctcctcctccatgccaagcgctacgttacgctacctcagagatgttcctggat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caggtgtctcctcctccatgccaagcgctacgttacgctacctcagagatgttcctggat 335

                                                                       
Query: 182 gttgctctctgctgaaactctgagcaggaaacagaaccagaacagaaacggtgctggtgg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gttgctctctgctgaaactctgagcaggaaacagaaccagaacagaaacggtgctggtgg 275

                                                                       
Query: 242 gtaaaccagcaggtagaggtgtggtgggcagccatgttccgacagtcgtctttcttcacc 301
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtcaaccagcaggtagaggtgtggtgggcagccatgttccgacagtcgtctttcttcacc 215

                      
Query: 302 ctgggcctgtg 312
           |||||||||||
Sbjct: 214 ctgggcctgtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)