BAC Information

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BAC

Clone NameMSMg01-294F19
Chromosome1 (Build37)
Map Location 140,072,207 - 140,072,496
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042567, LOC100043143, Ptprc
Downstream geneLOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294F19.T7 (MSMg01no294_f19.b1)MSMg01-294F19.TJ (MSMg01no294_f19.g1)
ACCAG422555AG422556
length739740
length of high quality
(start - end)
236 (130 - 365)290 (79 - 368)
definitionCHROMAT_FILE: MSMg01no294_f19.b1 PHD_FILE: MSMg01no294_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:02 2005CHROMAT_FILE: MSMg01no294_f19.g1 PHD_FILE: MSMg01no294_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCATGTATCTCGGGAGCATGTTTTTAAAGGTTACCACCGTTT
AATATAGCAAAGAATGTTGCTTTGTGCTTGTAAGCCATTCACTGAGACAA
TAATGTTTGCCTTTGACAAAATCCAACACACCTTCCGGATACAGGTCCTG
GAGAGACTAGGGATACAATAGACATACCTCAACAGAATAAAGAAGATTTA
CAGCAAGCCCAGAGTGAACATCAACTTACATGAAGAGAAACTCAAAGCAT
TTCCACTAAAATCAGAAACAAAAAACAAGGTCCTTCAAACTCTCCATTCC
TAATCCATGTAGTACTTGATANCTTACCCACCCCCCACCTGATAATTTCT
GCCAGGACATTTTTATAACCTTCTTTAAAAACAAAAAAAAAAATTGCCCA
GATCTTAGACAGTCTAAAAGAACTGGTGACACAAGGTGTTTTTCTTTCTT
TTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAAT
GCTATACCAAAAGTCCACCATATCCACCCACCCCCACTCCCCTGCCCACC
CACTCCCCCTTTTTGGCCCTGGTGTTCGAGAGGCCCATTGGACTTGCAAA
CTTTAAAGGTGTTTTTCTTAAATCAACATTACAGTAACCGGCAAACAAGC
ATGAGAAAGGAAACGGACTTGTATGGCTTTGATGATTGN
GACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGATGCACAGAGGAGAGTCT
CACTCCACCACTCAAGGAGATACCTGCCCGAAACTCAATGAAACCACCAC
CAGCAGCCCTGAAAAACAAATTGGGAGGCTCTTTAAAGCCAGTGAAGGTA
GTTTTGCATAGGAAAGCCACATCACCGAGGAAATAGGCATACCATTTGAG
TCTGAGCTCCTTATGGTAAATAACAGGAGTTGGCAGACATAAGCAGAAAG
ACAGTTGGTTTGGGTCACTTGGTCGTCTTCAACGAACTTCAGAGCCTCGT
ACCAGCTTAGTCACTGTGTTATCTTGCCACCCCCCATGTTGTTATACTCA
TGTGGAAGCTTGTCATATCTTGGGTAAGAAAATTATTGATGACTTGGGAG
GGATGTATTGTTTTTGAATAAAGCTTCCTTAAAAAGATATTAAAAAGGAG
CAATATTTATATAGTTTAAAACTGTTTTCCTTTAGAGGAAAATTGAGACG
AACCGCTAACAGCATAATTACTTGAATTAAGGAAGTAAGAAGCCATTGCA
CTGACTTTGAACGACCTTCCTTCCTTTTCCTTTTTTTCTAAACTTCCTGC
AAAGAGGACCCTTTACAGTATTTTTGGAGAAGTTAGTAAAACCGAATCTG
ACATCACCATTTACCAGTGCATGTAACTAGCAAGTGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_f19.g1 MSMg01no294_f19.g1 CHROMAT_FILE:
MSMg01no294_f19.g1 PHD_FILE: MSMg01no294_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:02 2005
         (290 letters)



>mm_chr1_140072007_140072696
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgatgcacagaggagagtctcactccaccactcaaggagatacctgcccgaaactcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 490 actgatgcacagaggagagtctcactccaccactcaaggagatacctgcataaaactcaa 431

                                                                       
Query: 61  tgaaaccaccaccagcagccctgaaaaacaaattgggaggctctttaaagccagtgaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgaaaccaccaccagcagccctgaaaaacaaattgggaggctctttaaagccagtgaagg 371

                                                                       
Query: 121 tagttttgcataggaaagccacatcaccgaggaaataggcataccatttgagtctgagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tagttttgcataggaaagccacatcaccgaggaaataggcataccatttgagtctgagct 311

                                                                       
Query: 181 ccttatggtaaataacaggagttggcagacataagcagaaagacagttggtttgggtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccttatggtaaataacaggagttggcagacataagcagaaagacagttggtttgggtcac 251

                                                             
Query: 241 ttggtcgtcttcaacgaacttcagagcctcgtaccagcttagtcactgtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttggtcgtcttcaacgaacttcagagcctcgtaccagcttagtcactgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)