Query= MSMg01no294_k03.b1 MSMg01no294_k03.b1 CHROMAT_FILE:
MSMg01no294_k03.b1 PHD_FILE: MSMg01no294_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:21 2005
(684 letters)
>mm_chr1_153255934_153257016
Length = 1083
Score = 1253 bits (648), Expect = 0.0
Identities = 672/680 (98%), Gaps = 1/680 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgtaaatcctgaacctcctttctccacctcccaggtgctaggattacagttgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtaaatcctgaacctcctttctccacctcccaggtgctaggattacagttgt 264
Query: 65 gtgttattacaccccgattttaaagtgccagagttataatattccaaagttctaaaagtt 124
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgttattatacccagattttaaagtgccagagttataatattccaaagttctaaaagtt 324
Query: 125 ctcttaaaggtgaataatttatttcaccatagaaaaggtcagagaaaggttattaaagtg 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ctcttaaaggtgaataatttatttcaccatagaaaaggtcagagaa-ggttattaaagtg 383
Query: 185 attcacaaatgcaaatgtaatctagaagaatgaatgggccaaggtttctagcctgaattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attcacaaatgcaaatgtaatctagaagaatgaatgggccaaggtttctagcctgaattc 443
Query: 245 tgttcatgttgtgacacaacagagatatcaagattagtacatgaaagaagtcagttcaca 304
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgttcctcttgtgacacaacagagatatcaagattagtacatgaaagaagtcagttcaca 503
Query: 305 gaaagactggaaatgcatctctacctggattacatgtaagatcaacacatgcacaagaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaagactggaaatgcatctctacctggattacatgtaagatcaacacatgcacaagaaa 563
Query: 365 agcttccactacacacatatgggagaaggtgatcagaagcccagggaacttatgctagct 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcttccactacacaaatatgggagaaggtgatcagaagcccagggaacttatgctagct 623
Query: 425 ctttagcctacttccattctcaggaccaccattatatttcctgataatcaatctttattc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctttagcctacttccattctcaggaccaccattatatttcctgataatcaatctttattc 683
Query: 485 ctataattatcaaattgtataattctttgttccaagacactagaaccatgaaatctcagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctataattatcaaattgtataattctttgttccaagacactagaaccatgaaatctcagt 743
Query: 545 ggatacactgatgttcatataaacagtgaaataccttctgcctagactattcctgcttcc 604
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 744 ggatacactgatgttcatataaacagtgaaataccttctgtctagactattcctgcttcc 803
Query: 605 acattccatcccatttcaccttcaccggagtagctctacccattcttttattctccatat 664
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 804 acattccatcccatttcaccttcacctgagtagctctacccattcttttattctccatat 863
Query: 665 aaatgttggtctctctagtc 684
||||||||||||||||||||
Sbjct: 864 aaatgttggtctctctagtc 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_k03.g1 MSMg01no294_k03.g1 CHROMAT_FILE:
MSMg01no294_k03.g1 PHD_FILE: MSMg01no294_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:21 2005
(289 letters)
>mm_chr1_153417179_153417867
Length = 689
Score = 520 bits (269), Expect = e-152
Identities = 284/289 (98%)
Strand = Plus / Minus
Query: 1 ttaccatctccactgccctcgtttctcacattaagcttgacaatagtcccacccggctcc 60
|||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||
Sbjct: 489 ttaccatctccactgccctcgtttctcacattaagcctcacaacagtctaacccggctcc 430
Query: 61 gggcttcaaaggaaaagccaagggtctattatagcctgaggggtggggggcttcccctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gggcttcaaaggaaaagccaagggtctattatagcctgaggggtggggggcttcccctct 370
Query: 121 catttaccagcgtttctgtctctgctctctaggttccagcccctgccctgctcgctcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 catttaccagcgtttctgtctctgctctctaggttccagcccctgccctgctcgctcccc 310
Query: 181 tatgccaaggtgaaccacttgctcagttttcctctctgggtgcctcattcattcaactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatgccaaggtgaaccacttgctcagttttcctctctgggtgcctcattcattcaactct 250
Query: 241 cacaggctaacatcttcaggctcatgaacagagtgctgctagtagcatt 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cacaggctaacatcttcaggctcatgaacagagtgctgctagtagcatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
