BAC Information

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BAC

Clone NameMSMg01-294M06
Chromosome1 (Build37)
Map Location 42,401,265 - 42,401,452
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041441, LOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294M06.T7 (MSMg01no294_m06.b1)MSMg01-294M06.TJ (MSMg01no294_m06.g1)
ACCAG422854AG422855
length735728
length of high quality
(start - end)
317 (39 - 355)190 (127 - 316)
definitionCHROMAT_FILE: MSMg01no294_m06.b1 PHD_FILE: MSMg01no294_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:31 2005CHROMAT_FILE: MSMg01no294_m06.g1 PHD_FILE: MSMg01no294_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
CAATTGATGCGCTTTCCTTGGGGGGGGGGATAATTTCTTCCACTCTGATC
ATGCCTTAATTGCCTGTAGCTCTTCGTGTAGGTAGGGTCAAGGTCTTATG
TGCTGTCCCTGCCTGTGTTCGCATGTGTATTGAGGCCATCCTGTTGTGGT
TCATGTTTAAGCAGTCATCCTTTTGAGACTTTATATAGTTTCTGACATTC
CTAATAGACTCTAGCAGACAATATCAGAGCAGACTCCCTGCTCCTCTGGC
TTTTATAACGCATCTGCCTCTTCTTCCAAAATGATCCTTAAGCCTTAGGT
ACTGTTTTTATGGACCCCTCCCCTCCGACCAGGCTCAACAACTCTGCATA
TCAATTACCCCGCGGTTTTAAGAAAAGATCTCCCTCTGTTTAGAGAGAAG
TTTCCTTGATTGAGGTAAGGATTATAAGTAATTGTGGGTATAAGGACAAA
TATTTATAATGTAGCTAGGGATTATGCTGCTTGATAAAGTGGCATTTATA
AACTCTTCTCTAAGATCAATGACCTTACTAGCTCTGGATGTTTAGCTAGG
TGTCCCGTCCTACGCATGATTTACTTCCCGATGAGTATGTATTAAGTCTC
ATTACAGAGTTGTTGGTTACTACCCCATTATGAATGCCACTATTGCTTCT
TTACGGCTAACGTTCCTCGCTATTCTATATTTTAC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGTTGGAACATTCAAACTGCTGCAGACAAC
ACCACGTTTCTGTGATGCCTACAGGCAACTCTCTCACCCCTAGATTCAAC
CAATGAAAACAGAATATTCAAGAGCATGAAATATTCGTACCCAATACAGT
CATTAATCACTAAATGTTACAGTAGATCAAAGTGTTGATTGATATAACAT
TTACTTTGTGTTATATAGCACAAGGGATGGATAAAAATTTAAGCTATGGA
GAAGGACATACATGTTTTTTTTGTTAAATGCTCTGCCACTTATTGAAGGA
CTGTTTTGGTAGTTCTNNAGCGNAAGCCCCGGATTGATTNNAANANNGNA
AGGNGGNGNNAAAAAANGCAGNCCCAAAGANNNNGGGCCNAGGAGGCGNG
NNGCCCCGNNGGAGNAGGGGGGNCCAGACGGGCCCGGGCCCGGAGACCCG
CCCACAAACGGCCAGAAAGCCAANACGCNCCGAGCGCCCCCCGGAAGAAG
AGGNAGAACACACAGCACCACCAGCACCAAGACCGCACGGAAGCCGCCAA
GCACCCAACACGCAGCAAAGGACCAGAAAACCAGAACCAGCGAGCAGGCC
CGCAAACACGCAGGGAACGCAAAGAGACGCCGCGCGCCCGGAGCAAAGAA
GGCCCGCCAAAAACCCCGAAGACCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_m06.g1 MSMg01no294_m06.g1 CHROMAT_FILE:
MSMg01no294_m06.g1 PHD_FILE: MSMg01no294_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:31 2005
         (190 letters)



>mm_chr1_42401065_42401654
          Length = 590

 Score =  325 bits (168), Expect = 1e-93
 Identities = 183/188 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactctctcacccctagattcaaccaatgaaaacagaatattcaagagcatgaaatattc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aactctctcacccgtagattcaaccaatgaaaacagaatattcaagagcatgaaatattc 329

                                                                       
Query: 61  gtacccaatacagtcattaatcactaaatgttacagtagatcaaagtgttgattgatata 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtacccaatacagtcattaatccctaaatgttacagtagatcaaagtgttgattgatata 269

                                                                       
Query: 121 acatttactttgtgttatatagcacaagggatggataaaaatttaagctatggagaagga 180
           ||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 268 acatttactttgtgttatacagtacaagggatggataaaaatttaagctatgaagaagga 209

                   
Query: 181 catacatg 188
           ||||||||
Sbjct: 208 catacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)