Query= MSMg01no294_p03.b1 MSMg01no294_p03.b1 CHROMAT_FILE:
MSMg01no294_p03.b1 PHD_FILE: MSMg01no294_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:44 2005
(508 letters)
>mm_chr1_62524291_62525205
Length = 915
Score = 922 bits (477), Expect = 0.0
Identities = 500/511 (97%), Gaps = 7/511 (1%)
Strand = Plus / Plus
Query: 5 gaattccttaaggactcaaactgccttgtgcaaaaatataaatccttccaattacttata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaaggactcaaactgccttgtgcaaaaatataaatccttccaattacttata 264
Query: 65 tgtcaggtacatttttagcctagtcaaacagatacacaataatgtatcctgacatttatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcaggtacatttttagcctagtcaaacagatacacaataatgtatcctgacatttatt 324
Query: 125 ttcgtctgttttgacccagagatgctgcttccttattttataccaccttctaactgtctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcgtctgttttgacccagagatgctgcttccttattttataccaccttctaactgtctt 384
Query: 185 attttgttgctttttctttctcttgctcaatttctttacctttctactgacaaaaaaaaa 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attttgttgttttttctttctcttgctcaatttctttacctttctactgacaaaaaaaaa 444
Query: 245 caaaa------aacaaaaaaccacagacctaaaatacaaacactaggacagtgtttgtca 298
||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaacaaaaaaaaaaaaaaacacagacctaaaatacaaacactaggacagtgtttgtca 504
Query: 299 caaggaaaaaaaaaa-taagaactttgaaagatcatggcttctaaagagtttgacaaagg 357
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaggaaaaaaaaaaataagaactttgaaagatcatggcttctaaagagtttgacaaagg 564
Query: 358 gtttgatgtttggaaaatgaaaatagctgccacgttcaaaaaacaactgtttttgtttga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttgatgtttggaaaatgaaaatagctgccacgttcaaaaaacaactgtttttgtttga 624
Query: 418 agagacgttgctgggagactttctgttttgtttataactgatctgggccttctatttgtg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agagacgttgctgggagactttctgttttgtttataactgatctgggccttctatttgtg 684
Query: 478 tctccaggcaaacacagagctttcactgcta 508
|||||||||||||| ||||||||||||||||
Sbjct: 685 tctccaggcaaacatagagctttcactgcta 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 915
Length adjustment: 10
Effective length of query: 498
Effective length of database: 905
Effective search space: 450690
Effective search space used: 450690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_p03.g1 MSMg01no294_p03.g1 CHROMAT_FILE:
MSMg01no294_p03.g1 PHD_FILE: MSMg01no294_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:44 2005
(288 letters)
>mm_chr1_62686976_62687661
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 283/288 (98%), Gaps = 2/288 (0%)
Strand = Plus / Minus
Query: 1 tttagagtaaagggttttcagtgagtttcctctctcatacctttctagctatacaaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttagagtaaagggttttcagtgagtttcctctctcatacctttctagctatacaaaaag 427
Query: 61 ggggtggaggaggtggcaaggagagggcccacgaggctggatggcccggcagcaggtttg 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 426 ggggtggaggaggtggcgaggagagggcccacgaggctggatggcccggcagcacgtttg 367
Query: 121 tagctcctgttaaaaaccctttctctgtgttatagagctcccagctacagagagataccc 180
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 366 tagctcctgttaaaaaccctttctc--tgttatagagctcccagctacagagagataccc 309
Query: 181 tagtgagttttcccaaggctgtaaatatactagtagctattcccttctcctggggacctg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 308 tagtgagttttcccaaggctgtaaatatactggtagctattcccttctcctggggacctg 249
Query: 241 ctgatcatagcctggacttccagataaccatatgctctcccggagccc 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctgatcatagcctggacttccagataaccatatgctctcccggagccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 686
Length adjustment: 9
Effective length of query: 279
Effective length of database: 677
Effective search space: 188883
Effective search space used: 188883
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
