TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTCCCCCACCTTAGCAGCCAGCACATTAGGATTAATGTCAATC
CAATTTGCTGTGTTCCATGACTTTTTTTTTTCCAATTAGAATGGCAAAAC
ACATTTCTGGCTGGCCTCAGATTTCATATTTCACTGTCCCTCTCTTGATT
TCTTGCCTTTTCATGATCTGTAATAAAATATTTCACTTTGATACCCAAGG
GATATGTTGTTTATAAATCAAATAATAAAGATAAGTGAACATGCCATAAA
ATGATCCCCTGCTTGCACTATTCCATCCCTACAACCATTTCCTGAAATGA
CAATTTTACAAATTTTATTTCTTGCCTTACCCCTATAACATTAAATATCA
GACATTTTTCTTGACTAGTGAACAGCAGACACTACTGATCAAATTTCCTT
TATAAAAAATGGTCAATTCATTCATGAATCTAATACCTATCTTCATCTCT
CTATATGTCTTGGCTAATTAGCAGAGGTAGATTAATTTTCCACTTTCATA
TAAAATGCTGTTGTTTATCTTTTCAGTACTTAATGGATTAAATAATCATT
TTCTTCACTTATTTCTATTCAGTAATTGATTTTCTACAATGTACACAGTA
ATCTTTTTTCTTTTCTGAAGATAATTTTTTATTAATTATTATTTACATTT
AAAATGTTTTCCCCCTTTCCAGGTCCTCCTCCACGAATCTCCCACC

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTAGAATGTTGCCTGTTCAGTGAC
ATTCAGAATTGCCTCTAGTATTGTAAGAGAGATAGTGAAAGAAATCAGGC
ATTGCTATCTACTACATAGAGTTAGAAATCTCAGGGCAAGCTTAGCAAAG
TAAGTTTAGAATTCTTATAGTTATGTATGGCAGACTACATTACTTATTAG
TAGAAAGTCCCCCCACACTATCACTTAGAATAAAAACCAACTCGCTCTCA
TATACAGAAATTTATAGTGGTTTAGGAAGTAGATTGGGCTGTGGTTTTAG
AGTATTGCATTATTCATGAGATAGTTAGCTAGAGCAGAACTCCCTAATTA
GAACCATGACCTGGGCAAGAAAGCCCCTGTCCCGGGAGTGTAAAGACCTC
ACACCTGGCTTCTAAGAATGTAACTGACCTTAGACAGAGCTGACTTTGTC
TCTGTTGTTTTATTGTCCAGTTCCTGCCAGTCTTTGTGTTTTCATTTCCT
CTGTTTTGTTTAGGAGTCATTAAGCATCTGGTAACCTTATTGTACCTTGC
AGATGTGTCACCTAAGTTGCCTATTTTCTTCTGTATAAAACGTCTGATGC
TCGATTTGACAAATAGCATTCAGATCCAACACACTCTCCTGTGTNCAGTC
TGTTTGTCACCCCATTCCCGCTGACTCTATGCCCATTTCTCCGAGA

Query= MSMg01no294_p04.b1 MSMg01no294_p04.b1 CHROMAT_FILE:
MSMg01no294_p04.b1 PHD_FILE: MSMg01no294_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:44 2005
         (601 letters)



>mm_chr1_26508200_26509200
          Length = 1001

 Score = 1102 bits (570), Expect = 0.0
 Identities = 591/598 (98%), Gaps = 2/598 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtcccccaccttagcagccagcacattaggattaatgtcaatccaatttgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaattctctgtcccccaccttagcagccagcacattaggattaatgtcaatccaatttgc 742

                                                                       
Query: 65  tgtgttccatgac-ttttttttttccaattagaatggcaaaacacatttctggctggcct 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgttccatgactttttttttttccaattagaatggcaaaacacatttctggctggcct 682

                                                                       
Query: 124 cagatttcatatttcactgtccctctcttgatttcttgccttttcatgatctgtaataaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagatttcatatttcactgtccctctcttgatttcttgccttttcatgatctgtaataaa 622

                                                                       
Query: 184 atatttcactttgatacccaagggatatgttgtttataaatcaaataataaagataagtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatttcactttgatacccaagggatatgttgtttataaatcaaataataaagataagtg 562

                                                                       
Query: 244 aacatgccataaaatgatcccctgcttgcactattccatccctacaaccatttcctgaaa 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 aacatgccataaaatgatcccctgcttgcactattccatccctacagccatttcctgaaa 502

                                                                       
Query: 304 tgacaattttacaaattttatttcttgccttacccctataacattaaatatcagacattt 363
           |||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||
Sbjct: 501 tgacaattttacaaattttatttcttggtttagccctataacattaaatatcagacattt 442

                                                                       
Query: 364 ttcttgactagtgaacagcagacactactgatcaaatttcctttataaaaaatggtcaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttgactagtgaacagcagacactactgatcaaatttcctttataaaaaatggtcaat 382

                                                                       
Query: 424 tcattcatgaatctaatacctatcttcatctctctatatgtcttggctaattagcagagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattcatgaatctaatacctatcttcatctctctatatgtcttggctaattagcagagg 322

                                                                       
Query: 484 tagattaattttccactttcatataaaatgctgttgtttatcttttcagtacttaatgga 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tagattaattttccactttcatataaaatgctgttgtttatcttttcagtacttaaggga 262

                                                                     
Query: 544 ttaaataatcattttcttcacttatttctattcagtaattgattttctacaatgtaca 601
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttaaataatcattttcttcacttatttctattcagtaattga-tttctacaatgtaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)