BAC Information

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BAC

Clone NameMSMg01-295B21
Chromosome1 (Build37)
Map Location 8,138,713 - 8,139,419
singlet/doubletsinglet
Overlap genenone
Upstream genePcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295B21.T7 (MSMg01no295_b21.b1)MSMg01-295B21.TJ (MSMg01no295_b21.g1)
ACCAG423104AG423105
length742746
length of high quality
(start - end)		698 (43 - 740)672 (75 - 746)
definitionCHROMAT_FILE: MSMg01no295_b21.b1 PHD_FILE: MSMg01no295_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:57 2005CHROMAT_FILE: MSMg01no295_b21.g1 PHD_FILE: MSMg01no295_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCAATTACATTGCTACAGAATGTGATGAGAGTGGACTGAGGGTAGGA
ACATGGGTACCAACACAGTGAGGAAGGAATATATTCTTCTTTGATTCTAC
ATATTATTAAACTGTGGAATCAGCATGAAGTGATATATTTGTAAGATGGT
TAATAATAAATAACTGACTGATATATTCTGATAAGCTAGTACCTGGTTTA
TTTTAAGCCAAATAACAGATGCTTGAGGTAAATAAGTCAAACAAATAACT
TACTATAATTTCATCAGGAGCAAAGATGGTAATTCCTACAAAATACAGTA
CAATTTTTAATTCTCAAATTTAAAATACTATACCCCAGGGCCATAGCTCT
GCCTGCATCTCTGGCAGCCTGTTGCCACCCAGGACAAACAGGAGAGACCC
CCACACCTTAATTCCTTGCCCTGGGTTTCCCCCAGCAGGCACAGGAACAA
TGAAGTCTGCCCTGTCTACTCTGTACTCCAACTTCTGATCAACACCTCTC
CTGCAGATATCAGAAACAGCCAGCTTTGCCTTCATCCTTATAGGCCCAGT
GCCACCCATAAAAAAACAGCTCTACCTGCAGTCCCAGAGGTCTACTGCAA
CCAGGGACTACCAGATCTACCTGCATCCCCAGAGAACAGTTGCCACCAAG
GACAATCTGCTCTAATCCCTTGTGAGTAACATTCAAATATAT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTCTTCTTCCACCAATTCTGAATT
TTTTAAGACCTGGGACTTTTTGTTTCTATTTCATTTTTTTGTGAGTTCTT
TTAGATGATCAAGTTATTCTTGGTTTAATTTTGGTTGTTTGCCTGAATCT
AGAAACTCATTCGTTTCTTTTTGATTTCCCAACTTAATAGAGTACAGCTT
TTAAAAATAGTTTCTTGTATTCTGAATTTCTTTAGTATTTGCTGTAATAT
TTATCTGTTCATTTCTAAATCTGTGAATTTTTATGTTCTCTTTATTTTGG
TTAATTGAGTCTCTCAATCTTGTGTATCATCTCAGAAAATCAGAAATTGG
ATTCATTGAATCTTCATATTTTTTTTTCTTATTTCTGTTTTGATGATTGT
CCTCTAATGTTTTTATTCTTACTATTGACTAAGTTTGCATTGCTTGTTCT
CATTTTACCAAATTAGGAGTCTCATCATAAATCACTTCTTTGTATTTGAT
TTTATTTTCTCTATTTTGTTATTATTTTTGTTGTTTCAAGACGGGATTCT
TTGTGTACCCCTGGCTGTTCTGGAACTTGCTCTGTGGACCAGGCAAGATC
TAACTCAGAGATATATCTGTTTCTGCCTCCCTATTTCTCAGATTAAAGGC
CTGTACCACTATGCTAATCTAATTTCTAATTTTTATTTATTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_b21.b1 MSMg01no295_b21.b1 CHROMAT_FILE:
MSMg01no295_b21.b1 PHD_FILE: MSMg01no295_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:57 2005
         (698 letters)



>mm_chr1_8138713_8139810
          Length = 1098

 Score = 1174 bits (607), Expect = 0.0
 Identities = 674/707 (95%), Gaps = 18/707 (2%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcttcaattacattgctacagaatgtgatgagagtggactgagggtaggaacatgggtac 68
           |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 707 tcttcaattacattgccacagaatgtgatgagagtggactgagggtaaaaacatgggtac 648

                                                                       
Query: 69  caacacagtgaggaaggaatatattcttctttgattctacatattattaaactgtggaat 128
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 647 caacacagtgaggaaggaatatattcttctttgattctacatattactaaactgtggaat 588

                                                                       
Query: 129 cagcatgaagtgatatatttgtaagatggttaataataaataactgactgatatattctg 188
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 587 cagcatgaagtgatatatttgtaagacggttaataataaataattgactgatatattctg 528

                                                                       
Query: 189 ataagctagtacctggtttattttaagccaaataacagatgcttgaggtaaataagtcaa 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ataagctagtacctggtttattttaagccaaataacagatgcttgaggtaaataagtcaa 468

                                                                       
Query: 249 acaaataacttactataatttcatcaggagcaaagatggtaattcctacaaaatacagta 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 acaaataacttactataatttcatcaggagcaaagatggtaattcctacaaaatacagta 408

                                                                       
Query: 309 caatttttaattctcaaatttaaaatactataccccagggccatagctctgcctgcatct 368
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 407 taatttttaattctcaaatttaaaatactataccccagggccatagctctgcctgcatcc 348

                                                                       
Query: 369 ctggcagcctgttgccacccaggacaaacaggagagacccccacaccttaattccttgcc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctggcagcctgttgccacccaggacaaacaggagagacccccacaccttaattccttgcc 288

                                                                       
Query: 429 ctgggtttcccccagcaggcacaggaacaatgaagtctgccctgtctactctgtactcca 488
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 287 ccgggtttcccccagcaggcacaggaacaatgaagtctgccctgtctgctctgtactcca 228

                                                                       
Query: 489 acttctgatcaacacctct-----------------cctgcagatatcagaaacagccag 531
           |||||||||||||||||||                 ||||||||||||||||||| ||||
Sbjct: 227 acttctgatcaacacctctacttgcaatcctggaggcctgcagatatcagaaacaaccag 168

                                                                       
Query: 532 ctttgccttcatccttataggcccagtgccacccataaaaaaacagctctacctgcagtc 591
           |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 167 ctttgccttcattcttataggccgggtgccacccataaaaaaacagctctacctgcagtc 108

                                                                       
Query: 592 ccagaggtctactgcaaccagggactaccagatctacctgcatccccagagaacagttgc 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ccagaggtctactgcaaccagggactaccagatctacctgcatccccagagaacagttgc 48

                                                          
Query: 652 caccaaggacaatctgctctaatcccttgtgagt-aacattcaaata 697
           ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 47  caccagggacaatctgctctaatcccttgtgagtaaacattcaaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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