BAC Information

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BAC

Clone NameMSMg01-295F19
Chromosome1 (Build37)
Map Location 43,709,668 - 43,709,887
singlet/doubletsinglet
Overlap genenone
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
Downstream gene1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295F19.T7 (MSMg01no295_f19.b1)MSMg01-295F19.TJ (MSMg01no295_f19.g1)
ACCAG423276AG423277
length732730
length of high quality
(start - end)
219 (438 - 656)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no295_f19.b1 PHD_FILE: MSMg01no295_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:16 2005CHROMAT_FILE: MSMg01no295_f19.g1 PHD_FILE: MSMg01no295_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGAAGCCTGGCTAGCATCATTTCTGAGACTGGATGTATGTGT
TCACTCTGGTGCTTTCTCTGGGCCCTGCACTTGCCATGCACTTTTAGAAG
TCTACTGGTTTAGGACTGAGAGCCAACAGGATGGCAGGCAGGTCTGTATT
TGCAGCTCACATAATCTGCCCAGAGGCTCTCATAAAGGAGACAAAGTGTC
TCATTCTCTTCCATTTTTATTCCTTTAGCATTCAAATACATCCATCCAGC
TGAGCAAGGCTGACTAAAAGAGAAAGCTCCAGTCCACAAGGCTTGCTTTC
CCGCCACCTGATATGTTCTGTACCCCCCCCCACTTTGATGCACAGCACTC
AAGATGAAAGAATACTGCCTCCCAAGATACAAACAGCCCCTAAGATATGA
TGCCATCTGTCCTCCATTAGCCAGTGCTCCTCAGAAATAGATAGCACACT
GAGAAGAAAAGGAATGGCCCTTCCATTTGCTGGAGATCTCCCCAGGATCT
TTGGAACTGGTTGAGATGATATGGATGCTGCACTAGAAAAATAGAGGTGA
GCAGAAGGTCTAAGGAAGGGCCTTGTCTCCAGCCATCAGCTGCTGTCAAA
TAATGAGAAAAACTAAAGCAGCTTCATTGTTCTACAGTATTCTCAGCTTG
TGACAGTGGGTACAGTAGACCCAAACAGACCT
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTATTTCAGGTTAAAGAG
GAGCACCCTATCACAAAAGTCAGAAACTCAAGACAGGCATACTAGAGAAC
AATGAATAGGCCAGGTATGTTGTGCATACCTTAATCCCAGCATCAGAAGG
CAGAGGCAGGTAGATCTGAGTTTGGGACTAGCCTAGTGTACATAGTGAGT
TCCAGGGCAGCCAGAGCCACATAGTGAGACTGTGTCTCAAAGGGGGAAGA
GAGATGAAGAGAATGAGAACCTGATTTGTAAAGACAGTTTGTAAGTATAA
CTCTCCTTAGGTTTTGCTTTTGCTTNATTTCCAAATCCCAGGATCATGTG
GCTATTCACACCGGATTCCCGCACACAAACTGTATGAAAATGAACCTTTG
AGAGGAAAAGATTTAGGGCCTGAGTGACACTGCCTGCTTAAGGCCATTTG
GCTATTAACAGTGCATCTTATGATGTAATTGAGAAGTGACAGTTTTCTGA
GTGTGGTAGGCCCAGCAGCACTGGAGAGGGTGATGTAGGACTGAGTTTGA
GGTCAGGCTAAGCTATATAGTAAGTTCTGGGATAGCCTGGACTAAAGTGA
GACCCTGTCTCCTAAGCAAACACAAGCAGAACAGGCAGACAGCAAAAAGT
ACCAGCATCCCCCCGCCCCCCCCCAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_f19.b1 MSMg01no295_f19.b1 CHROMAT_FILE:
MSMg01no295_f19.b1 PHD_FILE: MSMg01no295_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:16 2005
         (219 letters)



>mm_chr1_43709468_43710087
          Length = 620

 Score =  410 bits (212), Expect = e-119
 Identities = 218/220 (99%), Gaps = 1/220 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctaagatatgatg-ccatctgtcctccattagccagtgctcctcagaaatagatagca 59
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ccctaagatatgatgtccatctgtcctccattagccagtgctcctcagaaatagatagca 361

                                                                       
Query: 60  cactgagaagaaaaggaatggcccttccatttgctggagatctccccaggatctttggaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cactgagaagaaaaggaatggcccttccatttgctggagatctccccaggatctttggaa 301

                                                                       
Query: 120 ctggttgagatgatatggatgctgcactagaaaaatagaggtgagcagaaggtctaagga 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 300 ctggttgagatgatatggatgctgcactagagaaatagaggtgagcagaaggtctaagga 241

                                                   
Query: 180 agggccttgtctccagccatcagctgctgtcaaataatga 219
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agggccttgtctccagccatcagctgctgtcaaataatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 620
Length adjustment: 9
Effective length of query: 210
Effective length of database: 611
Effective search space:   128310
Effective search space used:   128310
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)