BAC Information

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BAC

Clone NameMSMg01-295M22
Chromosome1 (Build37)
Map Location 158,817,679 - 159,009,852
singlet/doubletdoublet
Overlap geneRalgps2, 4930439D14Rik
Upstream geneCep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Angptl1
Downstream gene1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M22.T7 (MSMg01no295_m22.b1)MSMg01-295M22.TJ (MSMg01no295_m22.g1)
ACCAG423597AG423598
length771769
length of high quality
(start - end)		319 (44 - 362)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no295_m22.b1 PHD_FILE: MSMg01no295_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:50 2005CHROMAT_FILE: MSMg01no295_m22.g1 PHD_FILE: MSMg01no295_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,817,679 - 158,817,993)(159,009,565 - 159,009,852)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATGAAGCCCTAATTTAAGCAAACAAAGCAAAACAGACTTAAAAACC
ATTTATCAGAGGCCGACAAGATGCCTCAGCAGGTAAAAAAGCCACCAAGC
TTCGAGGTTGGCAACCCTAGATTGATCCCAAGAAGTTTGCATCTCAAGCA
TTATGTAAAAAGCTGGGAAGACAGCGTTGGGATTGGGGTGGAAGGGTCTG
CAGAGACAGCAGGATTCTGGGCGCTTATTGGTCAGCAAGTACAGTCAGTC
CATATGCTCAGAGTTCACTGATCGTCTCAAGATGGGCTGGTGGTGATGAC
AAGGAGACACTATTACTTTTTCTCTCGGCCTNNTCCCACATGTGCATACA
CAACTAAGGACAGCCACACCCTCCCTCACAAAAAAAGAATGACTCACGGG
AGTAAATCTTCTTGTGAAAGCAACTGCATTTGGTGCAGAACTATATTTTT
CTTTTTTATTCCATCCACAACTTGAAAGTTCCTAGAAGATTAAAACAGAA
ATTAAGTATAAATTACATGTAAGAAACAACTCAGTTTTCTTACATTGGGG
AATTTAAACAGTAAAGACTGCGTATGTTCTTTTCTGGAACAACCAATAGG
AATACATAACAATACTAATTATTCTGTANAAGCTAGAACAAATTTATTAG
ATTATATGCAAATTATCTAAACGAATATAGACAAACTTGTATCTGATAGT
CAGAGTATGACAGAGTGTCTT

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTAATGCCAGGAGCATGAATCTAGA
CTTGCAAAGCCGCATTCAGGGCCAAAGAAAGCACAGGGTTGTCTATGGTA
CATGATGGCTGTTGCTCTGATCTCTGTAATTAGACATGTCCTTTGTGCAA
CCCGCTGCCAAGAGGCTCCAAGGCTGTGTGAGAAAGAAGCCTTCCTCCTG
CAGAGGGCACAGTGATTCAAGCCTTCCTCCTGCAGAGGGCGCCGTGATTC
ACGGGGAGCCACTGAGAAGGGGCAAGAGTCCTTCCTGCAGGAACAGAGGA
GAAGCCCAACATTANTTTCTCTTCCCACCACCCCCCCTTGGTTGTGTGGG
GAGTCCGGTTCAGCCCATGCTATGAGATCAAGAAAAAAAAGGCTGTCTTA
GGAGGAATGGGACATTCTAATACACAGACTCTCCCGGGACATCATCAGGG
GAATCTGGCGACCTCAGTGAGGGAGACGTAGGCCCTAGGACAGACTGGCA
GCAGGAGAGGTGGGCAAGACTAAGTTACAGAAGTGCAATAATTAAGATGG
GGCACAGAATGCTGCCAGGGGCTTGTTGCTAGTGCTGAAAACGGGTCTTC
CCCATGACCTTTATGGCGCATATCCCCACTTGGATTGTACAGGATAGGAC
GTCTGCAACTGTGCGAGGAATGGAGAATGTACTGACCTCCTGGACTCCCT
TGCAAGGTTTCCTTCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m22.b1 MSMg01no295_m22.b1 CHROMAT_FILE:
MSMg01no295_m22.b1 PHD_FILE: MSMg01no295_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:50 2005
         (319 letters)



>mm_chr1_158817475_158818193
          Length = 719

 Score =  547 bits (283), Expect = e-160
 Identities = 307/315 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgaagccctaatttaagcaaacaaagcaaaacagacttaaaaaccatttatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgaagccctaatttaagcaaacaaagcaaaacagacttaaaaaccatttatc 264

                                                                       
Query: 65  agaggccgacaagatgcctcagcaggtaaaaaagccaccaagcttcgaggttggcaaccc 124
           ||| |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 265 agaagccgacaagatggctcagcaggtaaaaaagccaccaaacttcgaggctggcaaccc 324

                                                                       
Query: 125 tagattgatcccaagaagtttgcatctcaagcattatgtaaaaagctgggaagacagcgt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagattgatcccaagaagtttgcatctcaagcattatgtaaaaagctgggaagacagcgt 384

                                                                       
Query: 185 tgggattggggtggaagggtctgcagagacagcaggattctgggcgcttattggtcagca 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 tgggattggggtggaagggtctgcagagacagcaggattctggacgcttattggtcagca 444

                                                                       
Query: 245 agtacagtcagtccatatgctcagagttcactgatcgtctcaagatgggctggtggtgat 304
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 445 agtacagtcagtccatatgctcagagttcactgagagtctcaagatgggctggtggtgat 504

                          
Query: 305 gacaaggagacacta 319
           |||||||||||||||
Sbjct: 505 gacaaggagacacta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_m22.g1 MSMg01no295_m22.g1 CHROMAT_FILE:
MSMg01no295_m22.g1 PHD_FILE: MSMg01no295_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:50 2005
         (290 letters)



>mm_chr1_159009365_159010054
          Length = 690

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtaatgccaggagcatgaatctagacttgcaaagccgcattcagggccaaagaaagca 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 488 cagtaatgccaggagcatgaatctagacttgcaaagctgcattcagggccaaagaaagca 429

                                                                       
Query: 61  cagggttgtctatggtacatgatggctgttgctctgatctctgtaattagacatgtcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagggttgtctatggtacatgatggctgttgctctgatctctgtaattagacatgtcctt 369

                                                                       
Query: 121 tgtgcaacccgctgccaagaggctccaaggctgtgtgagaaagaagccttcctcctgcag 180
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgtgcaacccactgcaaagaggctccaaggctgtgtgagaaagaagccttcctcctgcag 309

                                                                       
Query: 181 agggcacagtgattcaagccttcctcctgcagagggcgccgtgattcacggggagccact 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agggcacagtggttcaagccttcctcctgcagagggcgccgtgattcacggggagccact 249

                                                           
Query: 241 gagaaggggcaagagtccttcctgcaggaacagaggagaagcccaaca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gagaaggggcaagagtccttcctgcaggaacagaggagaagcccaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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