BAC Information

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BAC

Clone NameMSMg01-296A22
Chromosome1 (Build37)
Map Location 183,147,739 - 183,148,081
singlet/doubletsinglet
Overlap genenone
Upstream genePsen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26
Downstream geneLOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296A22.T7 (MSMg01no296_a22.b1)MSMg01-296A22.TJ (MSMg01no296_a22.g1)
ACCAG423774AG423775
length733773
length of high quality
(start - end)
327 (46 - 372)347 (76 - 422)
definitionCHROMAT_FILE: MSMg01no296_a22.b1 PHD_FILE: MSMg01no296_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:09 2005CHROMAT_FILE: MSMg01no296_a22.g1 PHD_FILE: MSMg01no296_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTTAGCTCTGTTCCCCATTTTTAAATAGGGTTAAGTGGTTCTC
TGGAGTCTAACTTCTTGAGTTCCTTGTATATACTGGATATTAGCCCTCTG
TCAAATGTGAGATTGGTAAAGATCTTTTCCCAATTTGTTGGTTGCCATTT
TGTCCTACTGACAGTGTCCTTTGCCTTATAGAAGCTTTGCAGTTTTATGA
GGTTGCATTTGTTGATTCTTGATTTTAGTGCATAAGCCATTGGTGTTCTG
TTCAGGAACTTTTCCCTGTGCCCATGTGTTTGAGCATTTTCCCCCACTTT
CTCTTCTGTAATATTCAGTGTATCTGGTTTTGTGTGGAGGTCCTTGATCC
ACTTGGACTTGAGCCCCCCCCAGGGAGATAAGAAATGGATCAATTTGCAT
TCTTCTACATGTTGACTGCCAGTTGAACCAGCACCATTTGTTGAAAATGT
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGCCCTTCTATTCTATTCCCCTGCTC
TACTGCCTGTCACTGTATCACTACTACGCTGTTTTTACTCCTTATTTTTC
TGTAATACAGCTCCTTCTTTATTTTCACTATTACCCCTTTCTTTCCTTAC
CTTGCATATTCTATTTTATTTATCTAACTTGTN
TCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTACCATACCCCAATCAAGTTTTT
TAAAACCTGCTTCAAAAATGTTCAGTCTCAAATATCTACTAGTCTAGTAT
CTCTATATGGACTATATTTTTAATAACCAGAATTTACTTCTTAAGTCATA
ATTGTCCCTTCATTATTTATGAGCTATAACAATGTCAGAGGGATAAAGAC
TGCATTTGACCTGTGAGTAAGGAAGACTGCCCAAAGGGCCTGTTGTAAGG
CTCTGTGCAGGGACTCCCTGGGCTATTAATTATTTATCTACTTTTCAAAA
TTAATAAATAGAAATGCCTTTCTGCTCTTTATCTCCCAGATGAATTTAGC
CGTGTGTGTGTGTGTGTGCCCCCGTGTGTGTGTGTGTGTGTGATTNNCTN
TTTGCTCCTTTCTTCCTTCTCTTCTTCTCCCTTATTTTCCCCACCTCCCT
CCTTCTCTATTATTCATCCCCTAAACCTCTCCACCTTCTCTTACATCTAT
TTCCACTTTTCTTCTATTCCTCCTCTTTTTTTTTTCCCTTTCCCATCCTT
TCCCCTTTCTTTTTTTTCCCCTTTTCTTCCTCTTCCTTCCTCTCTCTTTC
CTTTCCCTATTTTTATCCTCTTTTCCCCCTTTTTACCCCCTTCTTTTTCC
CTCCTATTCTTTTCCCACACATCCCATCCCTCCCCTTTTTTTCTCCCCAC
CCCTTCTCCTCCTCCTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_a22.g1 MSMg01no296_a22.g1 CHROMAT_FILE:
MSMg01no296_a22.g1 PHD_FILE: MSMg01no296_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:09 2005
         (347 letters)



>mm_chr1_183147539_183148285
          Length = 747

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaccataccccaatcaagttttttaaaacctgcttcaaaaatgttcagtctcaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 543 actaccataccccaatcaagttttttaaaacctgcttcaaaaatgttcagtttcaaatat 484

                                                                       
Query: 61  ctactagtctagtatctctatatggactatatttttaataaccagaatttacttcttaag 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctactagtctagtatccctatatggactatatttttaataaccagaatttacttcttaag 424

                                                                       
Query: 121 tcataattgtcccttcattatttatgagctataacaatgtcagagggataaagactgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcataattgtcccttcattatttatgagctataacaatgtcagagggataaagactgcat 364

                                                                       
Query: 181 ttgacctgtgagtaaggaagactgcccaaagggcctgttgtaaggctctgtgcagggact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttgacctgtgagtaaggaagactgcccaaagggcctgttgtaaggctctgtgcagggact 304

                                                                       
Query: 241 ccctgggctattaattatttatctacttttcaaaattaataaatagaaatgcctttctgc 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 303 ccctgggctattaattatttatctacttttcaaagttaataaatagaaatgcctttctgc 244

                                                      
Query: 301 tctttatctcccagatgaatttagccgtgtgtgtgtgtgtgtg 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tctttatctcccagatgaatttagccgtgtgtgtgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)