CCCATCAACTCAAAACTACNAAAAAATTTTCCCCNNNNNNCCCCCACCTX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACTTACTGCCCGAGATACATAGTGAGGCTCTGCCTCAAAAAAAAAAAA
AAAAAAAAAGTTTCTTGTTGCAAAAAAGTAAGGACTACCAACAAAGCCAT
CTTTCACCAAAGGCAACCACTGCCCCAATTTTAATTGTAAGCTCGTTTTT
AAAATGCACACAAATTGCATTCATTACTCACACATGTCTGGTTCATAGCT
ATCTTTTAAATTTTATTTTCTCTCAGAATTTTTGGGTGTATCCTCCCTGA
TACTGTAATATCAAAAAGTATACTAGGATCTTGACACACAAGCAGATCTT
TCAACTATAGCTGCTATCCGCCAAACAAACCACAGAGAANAGTATTTGCA
GAAAAAGTCAAACCCCCGAAAAAAAAGCATGAAAACAAAGAAGGGAGGGG
GGTTTACTATTTTAAAATTACCATGCCAGAAATTAAACTCAAATAACTAC
ATTTAAACCATTCATGGGAAGTCTAATAGACACACTTAATGTAAACATGG
GGTTAAGACAAGCAAATTTCCACCATTTATTGAAGCTTCATGACTACACC
CCGCTCAGCAGAGGTTATTAATATTAAAAAAAGAACCGGTTGGGGTACCA
GAGCCCACATCCTGTCGGAAACAAGTATTACACCTTACATACACTCAAGG
AGGCTAACAAGCCCGCAACAAACACTACCTGGGGATGGGAACAGGCCCTT
ACACAGGCATGCAAAAGGTAACGAAATCTGGGGGCAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACAAACAGTTTGAGAAAATAGAGTTCCATAAACGTGGTAAGGG
GCAAACGGTTTTTAACCTATAAAATATAGAACTCACACAAAACAACATGA
AATAAGTGAGAAAATGGGCTTGAACAGACAAGCCAGCAAGAACAGAACAA
AGACACACATCACACAAACAGCTTTGTTCCCACAATATCAGATCTATGCA
ACTAAGTATCAGATAGCTGGGGCTGGAGGGAAGGCTGAGGCGTCAGCCCA
CTGCTCTTGCCGTACACCTCAGTGTGGTTCCCTACACCCACACTGCGTGT
CTCACAACTGCCCATAACTCCAGCTCCGGGGGATCTGATGTGTCTGCCCT
TGGGGGACCCTGGACAAATGTACACACAGACACTCAGACACACAGACACA
CAGACACACACATACACACACACAGCAGCTAAAAAGACTAAGTAATGTAA
CTGTCACACTCAAATAAGCAAAGCGCGTATTTATAACAATAAGCTATTGA
CAAGATTACTATCCTATTAATAGATGGAATATTAAAAATAGGTGCCGCTG
ATTCAATTCTGTTTCCCAATATTTACCCCGTGAGAATATTAAAAACTGTC
CGCATAAGTATGCTCCTTTCACAATTATTGATAATACCTTAAAGTT

Query= MSMg01no296_e12.b1 MSMg01no296_e12.b1 CHROMAT_FILE:
MSMg01no296_e12.b1 PHD_FILE: MSMg01no296_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:26 2005
         (221 letters)



>mm_chr1_158867820_158868440
          Length = 621

 Score =  426 bits (220), Expect = e-124
 Identities = 220/220 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   taccaacaaagccatctttcaccaaaggcaaccactgccccaattttaattgtaagctcg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taccaacaaagccatctttcaccaaaggcaaccactgccccaattttaattgtaagctcg 261

                                                                       
Query: 62  tttttaaaatgcacacaaattgcattcattactcacacatgtctggttcatagctatctt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttttaaaatgcacacaaattgcattcattactcacacatgtctggttcatagctatctt 321

                                                                       
Query: 122 ttaaattttattttctctcagaatttttgggtgtatcctccctgatactgtaatatcaaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaaattttattttctctcagaatttttgggtgtatcctccctgatactgtaatatcaaa 381

                                                   
Query: 182 aagtatactaggatcttgacacacaagcagatctttcaac 221
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagtatactaggatcttgacacacaagcagatctttcaac 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no296_e12.g1 MSMg01no296_e12.g1 CHROMAT_FILE:
MSMg01no296_e12.g1 PHD_FILE: MSMg01no296_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:26 2005
         (285 letters)



>mm_chr1_159032491_159033175
          Length = 685

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   aaacagtttgagaaaatagagttccataaacgtggtaaggggcaaacggtttttaaccta 62
           |||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct: 485 aaacagtttgaggaaatcgatttccataaacgtggtaaggggcaaatggtttttaaccta 426

                                                                       
Query: 63  taaaatatagaactcacacaaaacaacatgaaataagtgagaaaatgggcttgaacagac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taaaatatagaactcacacaaaacaacatgaaataagtgagaaaatgggcttgaacagac 366

                                                                       
Query: 123 aagccagcaagaacagaacaaagacacacatcacacaaacagctttgttcccacaatatc 182
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 365 aagccagcaagaacagaacaaaggcacacatcacacaaacagctttgttcccacaatatc 306

                                                                       
Query: 183 agatctatgcaactaagtatcagatagctggggctggagggaaggctgaggcgtcagccc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agatctatgcaactaagtatcagatagctggggctggagggaaggctgaggcgtcagccc 246

                                                      
Query: 243 actgctcttgccgtacacctcagtgtggttccctacacccaca 285
           |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 245 actgctcttgccgtgcacctcagtgtggttccctacacccaca 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)