BAC Information

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BAC

Clone NameMSMg01-296G01
Chromosome1 (Build37)1 (Build37)
Map Location 135,805,769 - 135,805,997135,805,713 - 135,806,050
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc
Downstream genePrelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296G01.T7 (MSMg01no296_g01.b1)MSMg01-296G01.TJ (MSMg01no296_g01.g1)
ACCAG424006AG424007
length736755
length of high quality
(start - end)
229 (132 - 360)338 (76 - 413)
definitionCHROMAT_FILE: MSMg01no296_g01.b1 PHD_FILE: MSMg01no296_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:33 2005CHROMAT_FILE: MSMg01no296_g01.g1 PHD_FILE: MSMg01no296_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:33 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,805,769 - 135,805,997)(135,805,713 - 135,806,050)
sequence
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCATACACCCCACCCTCTTATC
AAGAAATTAATTCCCCATTGGCCCGCGGAATGCATCCTCCAGCTTTGAAT
TCCTTCCTGGGGCCTGCCTGGCACACACCAGGCAGGTAGGGCTGGCTGAG
GGCATCTGTTAGTTTTCATCCTCCACAAGACAGCCTAGGTTAGGCGGGTT
GAGAATCCCCCTCGGTAGCCAAATCCCCTCTAAAGAGAGCCCTGGCAACT
ACTCTTGTCCTTTTGAACTTGTGCGTGGCCTGTAGATCTTTCCAGATGAT
TTAGTCCTTGGTTGTTTGCCCTGCGCACTTCCTGTGCCCCCTGTATTTCT
CCAATTAGTTAGAAAACACCACTCTTCCTGCAAAGCCTTGGTGCTGCGCA
CTGAGAAACCCTCCACAGTTTGACATCGGTGGTTTCAAAGAACATGGCTG
CTTTGATTTCAAGTGGAGCTATTAGATTTCTGGACTGACTTTAGGGATAC
TTTTTTATTTTTTTACATGAAGGTTATGAGTTTTGAGGATATTGTCTAAG
AAGAGGCTTTGCGACATTTCTTTTAGAAGCTTTTTTCTTCTTTCTTTTCC
TTCCCTTCCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTCGCAAAAATTCGTGCATACACCCCACCCTCTTATC
AAGAAATTAATTCCCCAATGGCATGCGGTATGCATCCTCCAGCTTTGAAT
TCCTTCCTGGGGCCTGCCTGGCACACACCAGGCAGGTAGGGCTGGCTGAG
GGCATCTGTTAGTTTTCATCCTCCACAAGACAGCCTAGGTTAGGCGGGTT
GAGAATCCCCCTCGGTAGCCAAATCCCCTCTAAAGAGAGCCCTGGCAACT
ACTCTTGTCCTTTTGAACTTGTGTGTGGCCTGTAGATCTTTCCAGATGAT
TTAGTCCTTGGCTGCTTGCCCTGGGCACTTCCTGTGCCCCCTGTATTTCT
CCAATTAGTTAGAAAACACCACTCTTCCTGCAGTGCCTTGGTGCTGCGCA
CTGAGAAACCCTCCACAGCTTTGACATCGGTGGTTTCAAAGAACATGGCT
GCTTTGATTTCAAGTGGAGCTATTACATTTCTGGACTGACTTTAGGGATA
CTTTTTTATTTTTTTACATGAAGGTTATGAGTTTTGAGGATATTGTCTAA
AAAGAGGCTTTGCGACATTTCCTTCAAAAAGTTTTTTCTTCTTTCTGTTC
CTTCCCTTCCCTTCTATCTTTCCTTCTTTCTTTCTCACTTTCTCTCCTCC
GCTCCCTCTTTCTTTCTTTCCTCCCCTCTTTCTTTCTTTCCTCCCTTCTT
TCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_g01.b1 MSMg01no296_g01.b1 CHROMAT_FILE:
MSMg01no296_g01.b1 PHD_FILE: MSMg01no296_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:33 2005
         (229 letters)



>mm_chr1_135805569_135806197
          Length = 629

 Score =  435 bits (225), Expect = e-127
 Identities = 228/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatcctccagctttgaattccttcctggggcctgcctggcacacaccaggcaggtaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatcctccagctttgaattccttcctggggcctgcctggcacacaccaggcaggtaggg 260

                                                                       
Query: 61  ctggctgagggcatctgttagttttcatcctccacaagacagcctaggttaggcgggttg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggccgagggcatctgttagttttcatcctccacaagacagcctaggttaggcgggttg 320

                                                                       
Query: 121 agaatccccctcggtagccaaatcccctctaaagagagccctggcaactactcttgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatccccctcggtagccaaatcccctctaaagagagccctggcaactactcttgtcct 380

                                                            
Query: 181 tttgaacttgtgcgtggcctgtagatctttccagatgatttagtccttg 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgaacttgtgcgtggcctgtagatctttccagatgatttagtccttg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no296_g01.g1 MSMg01no296_g01.g1 CHROMAT_FILE:
MSMg01no296_g01.g1 PHD_FILE: MSMg01no296_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:33 2005
         (338 letters)



>mm_chr1_135805513_135806250
          Length = 738

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgcatacaccccaccctcttatcaagaaattaattccccaatggcatgcggtatgcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cgtgcatacaccccaccctcttatcaagaaattaattccccaatggcatggggtatgcat 260

                                                                       
Query: 61  cctccagctttgaattccttcctggggcctgcctggcacacaccaggcaggtagggctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccagctttgaattccttcctggggcctgcctggcacacaccaggcaggtagggctgg 320

                                                                       
Query: 121 ctgagggcatctgttagttttcatcctccacaagacagcctaggttaggcgggttgagaa 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgagggcatctgttagttttcatcctccacaagacagcctaggttaggcgggttgagaa 380

                                                                       
Query: 181 tccccctcggtagccaaatcccctctaaagagagccctggcaactactcttgtccttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccctcggtagccaaatcccctctaaagagagccctggcaactactcttgtccttttg 440

                                                                       
Query: 241 aacttgtgtgtggcctgtagatctttccagatgatttagtccttggctgcttgccctggg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttgtgcgtggcctgtagatctttccagatgatttagtccttggctgcttgccctggg 500

                                                 
Query: 301 cacttcctgtgccccctgtatttctccaattagttaga 338
           |||||||||||| |||||||||||||||||||||||||
Sbjct: 501 cacttcctgtgcaccctgtatttctccaattagttaga 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)