BAC Information

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BAC

Clone NameMSMg01-296H07
Chromosome1 (Build37)
Map Location 142,041,167 - 142,041,487
singlet/doubletsinglet
Overlap geneCfh
Upstream geneDennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
Downstream geneKcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296H07.T7 (MSMg01no296_h07.b1)MSMg01-296H07.TJ (MSMg01no296_h07.g1)
ACCAG424062AG424063
length736734
length of high quality
(start - end)
323 (45 - 367)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no296_h07.b1 PHD_FILE: MSMg01no296_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:39 2005CHROMAT_FILE: MSMg01no296_h07.g1 PHD_FILE: MSMg01no296_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCATATAGGCCTGAGTCATTCACTTCTATGATTTTTTATTTAAAC
TACAGAATTATTACCATAAGGGGCAGCTTTTAATTACAGAGGTTTGCTTG
AATGCCACAAAGTCCAGAAGTAAAAACAGTAATGAAAAGTACATGCTCAT
ATAAACCAACTATAAGGCAAATACATTTATTTATGCAGAAACTGTAGTCA
ATTAAAATAATTTTCTAATGTAGCAATGGTATAAGTTAGCAGATCTAGGC
AAAGATGATTTAAGACACACAAAACACAAAACATAAAATGCACATTTGAG
GAATGGCTTGGTGTATCATGAGTTTACATTCCTGATTTAGTCAAAAATTA
TATTGTTTCTTCCTTATTCAATATGTTTTCCCAAATAAGTCAAAGAACAT
GTTTAATTCAAAGAGAAAGAGGTATAAAATTGAACCTGTGACTATTAATA
AATAGCCCAAATGAGAATCAAGGCCAGCAATTTCGATAATAGAATTAGAA
AGTAGAAGGAATAATGCTTCTTGCTCTGAATATCTTTCTGATGAAGTTAT
TGTCAACTTTAGAATCATGAAGTACTATATATGATGGCATCAATAGAGAA
GAATTCATACCAGAGAGGAACACATACAACAGGAGGAGAGAGAGGAAACC
TGACTGATTCGTTAAATATGTGAAGATGCATTCATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAATCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGTAC
ACTCCTCCATTGGTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGGAGCCA
GCAATACCTCTCTGGTGCTTATCCNACGAGACGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGCCCATAGAAAAAAAATAAATAATAGCCGGAGG
GTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
AATACATGAAACTCAAGAAAAATGAAGACTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_h07.b1 MSMg01no296_h07.b1 CHROMAT_FILE:
MSMg01no296_h07.b1 PHD_FILE: MSMg01no296_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:39 2005
         (323 letters)



>mm_chr1_142040963_142041687
          Length = 725

 Score =  594 bits (307), Expect = e-174
 Identities = 317/321 (98%), Gaps = 2/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcatataggcctgagtcattcacttctatga--ttttttatttaaactacaga 62
           |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||
Sbjct: 525 gaattctgcatataggcctgagccattcacttctatgattttttttatttaaactacaga 466

                                                                       
Query: 63  attattaccataaggggcagcttttaattacagaggtttgcttgaatgccacaaagtcca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 attattaccataaggggcagcttttaattacagaggtttgcttgaatgccacaaagtcca 406

                                                                       
Query: 123 gaagtaaaaacagtaatgaaaagtacatgctcatataaaccaactataaggcaaatacat 182
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaagtaaaaagagtaatgaaaagtacatgctcatataaaccaactataaggcaaatacat 346

                                                                       
Query: 183 ttatttatgcagaaactgtagtcaattaaaataattttctaatgtagcaatggtataagt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttatttatgcagaaactgtagtcaattaaaataattttctaatgtagcaatggtataagt 286

                                                                       
Query: 243 tagcagatctaggcaaagatgatttaagacacacaaaacacaaaacataaaatgcacatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tagcagatctaggcaaagatgatttaagacacacaaaacacaaaacataaaatgcacatt 226

                                
Query: 303 tgaggaatggcttggtgtatc 323
           |||||||||||||||||||||
Sbjct: 225 tgaggaatggcttggtgtatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 725
Length adjustment: 9
Effective length of query: 314
Effective length of database: 716
Effective search space:   224824
Effective search space used:   224824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)