BAC Information

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BAC

Clone NameMSMg01-296I06
Chromosome1 (Build37)
Map Location 87,502,707 - 87,502,943
singlet/doubletsinglet
Overlap geneSp140
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110
Downstream geneSp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296I06.T7 (MSMg01no296_i06.b1)MSMg01-296I06.TJ (MSMg01no296_i06.g1)
ACCAG424107AG424108
length773737
length of high quality
(start - end)
---239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no296_i06.b1 PHD_FILE: MSMg01no296_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:44 2005CHROMAT_FILE: MSMg01no296_i06.g1 PHD_FILE: MSMg01no296_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TACCGGCAACATACACAATTTTGCCCCAGCTCGACATGATCGCGCAAACA
ATAGGGACTACAAGTAGATGACCGATCTCGACTGACCGATGCCCATATGG
ACCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTAATTGTCTT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTACCTATTTTTTTGTTGTCTC
ATTTTGTTTTTCTTTTTTTCAGTACTGGGGATCAATTCTGGGGATTCTCT
TGAGAATGATTTTTGGAGAAACTTTCATATCTTGTCTCTGTTTTTTCTAA
ACAGTGTGTGAGCATGTTAGCTGCTTATTACTTCGTGGCATTTGTAGTTT
AGTTTTGACACCTTGGCACTTTTGTATTTCTGACTAATTTGCTGCATTTT
CTAGTTGGATCAGTGCATCACATATGAAACTGCAGTATTTGAATTTACCG
TCTGTGAAATAATTTATTTTCCAACTCACATTTTATGGGGAGTTCATTTC
AGATTCCACATGAAACCACCCCCGTAGTGGTGTGTGTTTTTAACTCCAGA
ATTAGGGAAATATAGACATTTGGATCCCCGGAGATGACTGGCCAGCTAAT
CTGGCTGAACTAATGATATCCGGGTTCAGTGAGAGACCCCATCTCAAAAC
ATAAGGTGGAGAACAACTGGACTCTTTGCCCAGGCATATGCCAGGCACAT
ACACACGAGCAAGCATGTGTATATACATAGACAGCCTCCTTAAGTTTAAA
ATAAAAATTATTGTATATTTTTATATGTTACTACATATAAATTTTAGGTT
CTTTAAAAAAAAAGACCCTCTCAAGATTTTTTTGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_i06.g1 MSMg01no296_i06.g1 CHROMAT_FILE:
MSMg01no296_i06.g1 PHD_FILE: MSMg01no296_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:44 2005
         (239 letters)



>mm_chr1_87502507_87503145
          Length = 639

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcaattctggggattctcttgagaatgatttttggagaaactttcatatcttgtctct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 gatcaattctggggattctcttgagaatgacttttggagaaactttcatatcttgtctct 260

                                                                       
Query: 61  gttttttctaaacagtgtgtgagcatgttagctgcttattacttcgtggcatttgtagtt 120
           ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 261 gttttttctaaacagtgtgtgagcatgtttgctgcttattacttcgtggcgtttgtagtt 320

                                                                       
Query: 121 tagttttgacaccttggcacttttgtatttctgactaatttgctgcattttctagttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttttgacaccttggcacttttgtatttctgactaatttgctgcattttctagttgga 380

                                                                    
Query: 181 tcagtgcatcacatatgaaactgcagtatttgaatttaccgtctgtgaaataattta 237
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgcatcacatgtgaaactgcagtatttgaatttaccgtctgtgaaataattta 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)